| 2'-deoxyadenosine |
| Model constructed for 2'-deoxyadenosine from subcomponents for base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyadenosine-5'-phosphate |
| Model constructed for 2'-deoxyadenosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyadenosine |
| Model constructed for 2'-deoxyadenosine from subcomponents for base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyadenosine-5'-phosphate |
| Model constructed for 2'-deoxyadenosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | adenosine |
| Model constructed for adenosine from subcomponents for base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | adenosine-5'-phosphate |
| Model constructed for adenosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | adenosine |
| Model constructed for adenosine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | adenosine-5'-phosphate |
| Model constructed for adenosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxyadenosine |
| Model constructed for protonated 2'-deoxyadenosine from subcomponents for protonated base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxyadenosine-5'-phosphate |
| Model constructed for protonated 2'-deoxyadenosine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxyadenosine |
| Model constructed for protonated 2'-deoxyadenosine from subcomponents for protonated base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxyadenosine-5'-phosphate |
| Model constructed for protonated 2'-deoxyadenosine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated adenosine |
| Model constructed for protonated adenosine from subcomponents for protonated base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated adenosine-5'-phosphate |
| Model constructed for protonated adenosine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated adenosine |
| Model constructed for protonated adenosine from subcomponents for protonated base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated adenosine-5'-phosphate |
| Model constructed for protonated adenosine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxycytidine |
| Model constructed for 2'-deoxycytidine from subcomponents for base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxycytidine-5'-phosphate |
| Model constructed for 2'-deoxycytidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxycytidine |
| Model constructed for 2'-deoxycytidine from subcomponents for base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxycytidine-5'-phosphate |
| Model constructed for 2'-deoxycytidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | cytidine |
| Model constructed for cytidine from subcomponents for base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | cytidine-5'-phosphate |
| Model constructed for cytidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | cytidine |
| Model constructed for cytidine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | cytidine-5'-phosphate |
| Model constructed for cytidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxycytidine |
| Model constructed for protonated 2'-deoxycytidine from subcomponents for protonated base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxycytidine-5'-phosphate |
| Model constructed for protonated 2'-deoxycytidine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxycytidine |
| Model constructed for protonated 2'-deoxycytidine from subcomponents for protonated base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated 2'-deoxycytidine-5'-phosphate |
| Model constructed for protonated 2'-deoxycytidine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated cytidine |
| Model constructed for protonated cytidine from subcomponents for protonated base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated cytidine-5'-phosphate |
| Model constructed for protonated cytidine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated cytidine |
| Model constructed for protonated cytidine from subcomponents for protonated base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | protonated cytidine-5'-phosphate |
| Model constructed for protonated cytidine-5'-phosphate from subcomponents for protonated base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyguanosine |
| Model constructed for 2'-deoxyguanosine from subcomponents for base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyguanosine-5'-phosphate |
| Model constructed for 2'-deoxyguanosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyguanosine |
| Model constructed for 2'-deoxyguanosine from subcomponents for base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyguanosine-5'-phosphate |
| Model constructed for 2'-deoxyguanosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | guanosine |
| Model constructed for guanosine from subcomponents for base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | guanosine-5'-phosphate |
| Model constructed for guanosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | guanosine |
| Model constructed for guanosine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | guanosine-5'-phosphate |
| Model constructed for guanosine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | PO4 |
 | 2'-deoxythymidine |
| Model constructed for 2'-deoxythymidine from subcomponents for base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxythymidine-5'-phosphate |
| Model constructed for 2'-deoxythymidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxythymidine |
| Model constructed for 2'-deoxythymidine from subcomponents for base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxythymidine-5'-phosphate |
| Model constructed for 2'-deoxythymidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | thymidine |
| Model constructed for thymidine from subcomponents for base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | thymidine-5'-phosphate |
| Model constructed for thymidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | thymidine |
| Model constructed for thymidine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | thymidine-5'-phosphate |
| Model constructed for thymidine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyuridine |
| Model constructed for 2'-deoxyuridine from subcomponents for base and sugar. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyuridine-5'-phosphate |
| Model constructed for 2'-deoxyuridine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyuridine |
| Model constructed for 2'-deoxyuridine from subcomponents for base and sugar. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | 2'-deoxyuridine-5'-phosphate |
| Model constructed for 2'-deoxyuridine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is deoxyribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | uridine |
| Model constructed for uridine from subcomponents for base and sugar. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | uridine-5'-phosphate |
| Model constructed for uridine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C2'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | uridine |
| Model constructed for uridine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | uridine-5'-phosphate |
| Model constructed for uridine-5'-phosphate from subcomponents for base, sugar and phosphate. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. |
 | neutral adenine |
| Model constructed for neutral adenine with an N9-glycosidic linkage. |
 | protonated adenine |
| Model constructed for protonated adenine with an N9-glycosidic linkage. |
 | beta-ribosyl-purine and beta-deoxyribosylpurine |
| Model constructed for beta-ribosylpurine and beta-deoxyribosylpurine compounds by sampling structures where deoxyribose or ribose are bound to a purine though a C1'-N glycosidic linkage. The constraint isthat the sugar is in the C2'-endo conformation, and the chi torsion angle is undefined. |
 | C2'-endo ribosyl and deoxyribosyl-purine |
| Model constructed for beta-ribosylpurine compounds by sampling structures where deoxyribose or ribose are bound to purine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C2'-endo conformation and that the chi torsion angle is antiperiplanar. |
 | C2'-endo ribosyl and deoxyribosyl-purine |
| Model constructed for beta-ribosylpurine compounds by sampling structures where deoxyribose or ribose are bound to purine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C2'-endo conformation and that the chi torsion angle is synclinal. |
 | beta-ribosyl-pyrimidine and beta-deoxyribosylpyrimidine |
| Model constructed for beta-ribosylpyrimidine and beta-deoxyribosylpyrimidine compounds by sampling structures where deoxyribose or ribose are bound to a pyrimidine though a C1'-N glycosidic linkage. The constraint isthat the sugar is in the C2'-endo conformation, and the chi torsion angle is undefined. |
 | C2'-endo ribosyl and deoxyribosyl-pyrimidine |
| Model constructed for beta-ribosylpyrimidine compounds by sampling structures where deoxyribose or ribose are bound to pyrimidine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C2'-endo conformation and that the chi torsion angle is antiperiplanar. |
 | C2'-endo ribosyl and deoxyribosyl-pyrimidine |
| Model constructed for beta-ribosylpyrimidine compounds by sampling structures where deoxyribose or ribose are bound to pyrimidine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C2'-endo conformation and that the chi torsion angle is synclinal. |
 | beta-ribosyl-purine and beta-deoxyribosylpurine |
| Model constructed for beta-ribosylpurine and beta-deoxyribosylpurine compounds by sampling structures where deoxyribose or ribose are bound to a purine though a C1'-N glycosidic linkage. The constraint isthat the sugar is in the C3'-endo conformation, and the chi torsion angle is undefined. |
 | C3'-endo ribosyl and deoxyribosyl-purine |
| Model constructed for beta-ribosylpurine compounds by sampling structures where deoxyribose or ribose are bound to purine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C3'-endo conformation and that the chi torsion angle is antiperiplanar. |
 | beta-ribosyl-pyrimidine and beta-deoxyribosylpyrimidine |
| Model constructed for beta-ribosylpyrimidine and beta-deoxyribosylpyrimidine compounds by sampling structures where deoxyribose or ribose are bound to a pyrimidine though a C1'-N glycosidic linkage. The constraint isthat the sugar is in the C3'-endo conformation, and the chi torsion angle is undefined. |
 | C3'-endo ribosyl and deoxyribosyl-pyrimidine |
| Model constructed for beta-ribosylpyrimidine compounds by sampling structures where deoxyribose or ribose are bound to pyrimidine though a C1'-N glycosidic linkage. The constraints are that sugar is in the C3'-endo conformation and that the chi torsion angle is antiperiplanar. |
 | 1'-amino-ribose and 2'-deoxyribose with 5'-phosphate |
| Model constructed for 1'-amino-ribose and 2'-deoxyribose with 5'-phosphate in both the C2' and C3'endo conformations with the constraint that P is bound to O5*. |
 | 1'amino ribose and 1'amino-deoxyribose. |
| Model constructed for 1'-amino-ribose and 1'-amino-deoxyribose. |
 | 1'amino ribose and 1'amino-deoxyribose. |
| Model constructed for 1'-amino-ribose and 1'-amino-deoxyribose with the constraint that the gamma torsion is synclinal. |
 | 1'amino ribose and 1'amino-deoxyribose. |
| Model constructed for 1'-amino-ribose and 1'-amino-deoxyribose with the constraint that the gamma torsion is -synclinal. |
 | 1'amino ribose and 1'amino-deoxyribose. |
| Model constructed for 1'-amino-ribose and 1'-amino-deoxyribose with the constraint that the gamma torsion is antiperiplanar. |
 | cytosine |
| Model constructed for cytosine with an N1-glycosidic linkage. |
 | protonated cytosine |
| Model constructed for protonated cytosine with an N1-glycosidic linkage. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose with the constraint that it is in the C2'-endo conformation. |
 | 1'-amino-2'deoxyribose |
| Model constructed for 1'-amino-2'deoxyribose constrained to have H bound to O3* and to be in the C2'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-2'deoxyribose |
| Model constructed for 1'-amino-2'deoxyribose constrained to have P bound to O3* and to be in the C2'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to P and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to P and O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to P and O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C2'endo conformation with the constraint that O3* is bound to P and O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose constrained to be in the C2'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose constrained to be in the C2'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose with the constraint that it is in the C3'-endo conformation. |
 | 1'-amino-2'deoxyribose |
| Model constructed for 1'-amino-2'deoxyribose constrained to have H bound to O3* and to be in the C3'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-2'deoxyribose |
| Model constructed for 1'-amino-2'deoxyribose constrained to have P bound to O3* and to be in the C3'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'endo conformation with the constraint that O5* is bound to H. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose in the C3'endo conformation with the constraint that O5* is bound to P. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose constrained to be in the C3'-endo conformation. |
 | 1'-amino-2'-deoxyribose |
| Model constructed for 1'-amino-2'-deoxyribose constrained to be in the C3'-endo conformation. |
 | 1'-amino-2'deoxyribose |
| Model constructed for C2'-endo and C3'-endo deoxyribose with the constraint that H is bound to O3*. |
 | 1'-amino-2'deoxyribose |
| Model constructed for C2'-endo and C3'-endo deoxyribose with the constraint that H is bound to O3*. |
 | 1'amino-2'-deoxyribose |
| Model constructed for 1'amino-2'-deoxyribose in both the C2' and C3'endo conformations with the constraint that H is bound to O5*. |
 | 1'amino-2'-deoxyribose |
| Model constructed for 1'amino-2'-deoxyribose in both the C2' and C3'endo conformations with the constraint that H is bound to O5*. |
 | guanine |
| Model constructed for guanine with an N9-glycosidic linkage. |
 | 1'-amino ribose |
| Model constructed for 1'-amino ribose. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose with the constraint that it is in the C2'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to have H bound to O3* and to be in the C2'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to have P bound to O3* and to be in the C2'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O3* is bound to P and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C2'endo conformation with the constraint that O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to be in the C2'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to be in the C2'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose with the constraint that it is in the C3'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to have H bound to O3* and to be in the C3'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to H and O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to have P bound to O3* and to be in the C3'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O3* is bound to P and O5* is bound to H. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. The C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (-synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (antiperiplanar), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose in the C3'endo conformation with the constraint that O5* is bound to P. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to be in the C3'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for 1'-amino-ribose constrained to be in the C3'-endo conformation. |
 | 1'-amino-ribose |
| Model constructed for C2'-endo and C3'-endo ribose with the constraint that H is bound to O3*. |
 | 1'-amino-ribose |
| Model constructed for C2'-endo and C3'-endo ribose with the constraint that H is bound to O3*. |
 | 1'amino-ribose |
| Model constructed for 1'amino-ribose in both the C2' and C3'endo conformations with the constraint that H is bound to O5*. |
 | 1'amino-ribose |
| Model constructed for 1'amino-ribose in both the C2' and C3'endo conformations with the constraint that H is bound to O5*. |
 | thymine |
| Model constructed for thymine with an N1-glycosidic linkage. |
 | uracil |
| Model constructed for uracil with an N1-glycosidic linkage. |