# Minimized with a chisquare of 0.033905. ################################################################################ # # File: U_riboseC3endo_O3H_O5H_anti_+sc # Date: 08-Dec-97 21:33:21 # # This file was created by software developed by the # Nucleic Acid Database Project # # H. M. Berman, W. K. Olson, D. L. Beveridge, J. D. Westbrook, A. Gelbin, # T. Demeny, S. H. Shieh, A. R. Srinivasan, and B. Schneider. (1992). # The Nucleic Acid Database: A Comprehensive Relational Database of # Three-Dimensional Structures of Nucleic Acids. Biophys J., 63, 751-759. # # Questions or comments should be directed to: # # # ndbadmin@ndbserver.rutgers.edu # ################################################################################ data_U_riboseC3endo_O3H_O5H_anti_+sc # _chem_comp.id U_riboseC3endo_O3H_O5H_anti_+sc _chem_comp.name uridine _chem_comp.type 'RNA linking' _chem_comp.model_details ;Model constructed for uridine from subcomponents for base and sugar. The sugar is ribose in the C3'-endo conformation, and geometries for the gamma torsion angle (synclinal), the chi torsion angle (antiperiplanar), and the C3*-O3* and C5*-O5* bonds are inserted from other models. ; _chem_comp.parent . _chem_comp.formula 'H10 C9 N2 O6 ' _chem_comp.formula_weight 242.19 _chem_comp.number_atoms_all 27 _chem_comp.number_atoms_nh 17 _chem_comp.ndb_formal_charge 0 # loop_ _ndb_composite.comp_id _ndb_composite.sub_comp_id _ndb_composite.sub_type _ndb_composite.details U_riboseC3endo_O3H_O5H_anti_+sc ura base 'Model constructed for uracil with an N1-glycosidic linkage.' U_riboseC3endo_O3H_O5H_anti_+sc ribose_C3endo_O3H_O5H_+sc sugar ;Model constructed for 1'-amino-ribose in the C3'-endo conformation. the gamma torsion (synclinal), the corresponding O4*-C4*-C5*-O5* torsion, and the C3*-O3* and C5*-O5* bond geometries are inserted from other models. ; # _chem_comp_link.link_id ribose_pyrimidine _chem_comp_link.type_comp_1 sugar _chem_comp_link.type_comp_2 base _chem_comp_link.ndb_comp_id_comp_1 ribose_C3endo_O3H_O5H_+sc _chem_comp_link.ndb_comp_id_comp_2 ura # loop_ _ndb_dbsearch.db _ndb_dbsearch.sample_size _ndb_dbsearch.id _ndb_dbsearch.dbversion _ndb_dbsearch.time _ndb_dbsearch.dbreleasedate _ndb_dbsearch.comp_id csd 60 ura 512 ;Mon Dec 8 13:28:20 1997 ; 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 26 ribose 512 ;Mon Dec 8 13:30:59 1997 ; 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 23 ribose_C3endo_O3H 512 ;Mon Dec 8 13:40:25 1997 ; 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 18 ribose_C3endo_O5H 512 ;Mon Dec 8 13:44:55 1997 ; 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 94 all_ribose_gamma 512 ;Mon Dec 8 14:31:38 1997 ; 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 13 ribose_C3endo_pyrimidine 512 'Wed Jul 2 01:42:39 1997' 'Sep 15 19:34:11 BST 1996' U_riboseC3endo_O3H_O5H_anti_+sc csd 16 C3endo_pyrimidine_anti . . . U_riboseC3endo_O3H_O5H_anti_+sc # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.substruct_code _chem_comp_atom.charge _chem_comp_atom.model_cartn_x _chem_comp_atom.model_cartn_y _chem_comp_atom.model_cartn_z U_riboseC3endo_O3H_O5H_anti_+sc N1 N base 0 -1.5487 1.1551 4.2340 U_riboseC3endo_O3H_O5H_anti_+sc C2 C base 0 -1.5070 1.2283 5.6116 U_riboseC3endo_O3H_O5H_anti_+sc N3 N base 0 -2.6023 0.7048 6.2542 U_riboseC3endo_O3H_O5H_anti_+sc C4 C base 0 -3.7084 0.1209 5.6699 U_riboseC3endo_O3H_O5H_anti_+sc C5 C base 0 -3.6774 0.0913 4.2405 U_riboseC3endo_O3H_O5H_anti_+sc C6 C base 0 -2.6266 0.5991 3.5882 U_riboseC3endo_O3H_O5H_anti_+sc O2 O base 0 -0.5691 1.7143 6.2192 U_riboseC3endo_O3H_O5H_anti_+sc O4 O base 0 -4.6142 -0.3112 6.3835 U_riboseC3endo_O3H_O5H_anti_+sc H3 H base 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc H5 H base 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc H6 H base 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc C1* C sugar 0 -0.2796 1.4626 3.5236 U_riboseC3endo_O3H_O5H_anti_+sc C2* C sugar 0 0.3616 2.7507 4.0433 U_riboseC3endo_O3H_O5H_anti_+sc C3* C sugar 0 0.9774 3.3078 2.7618 U_riboseC3endo_O3H_O5H_anti_+sc C4* C sugar 0 -0.0606 2.9340 1.7170 U_riboseC3endo_O3H_O5H_anti_+sc C5* C sugar 0 0.4420 2.8314 0.3006 U_riboseC3endo_O3H_O5H_anti_+sc O2* O sugar 0 -0.6717 3.6087 4.5047 U_riboseC3endo_O3H_O5H_anti_+sc O3* O sugar 0 1.2228 4.6986 2.8113 U_riboseC3endo_O3H_O5H_anti_+sc O4* O sugar 0 -0.5559 1.6449 2.1554 U_riboseC3endo_O3H_O5H_anti_+sc O5* O sugar 0 1.5774 1.9926 0.2342 U_riboseC3endo_O3H_O5H_anti_+sc HA1* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HA2* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HAO2* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HA3* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HA4* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HA5* H sugar 0 . . . U_riboseC3endo_O3H_O5H_anti_+sc HB5* H sugar 0 . . . # loop_ _chem_comp_chir.comp_id _chem_comp_chir.id _chem_comp_chir.atom_id _chem_comp_chir.number_atoms_all _chem_comp_chir.number_atoms_nh _chem_comp_chir.volume_flag _chem_comp_chir.volume_three _chem_comp_chir.volume_three_esd _chem_comp_chir.ndb_plane_flag _chem_comp_chir.ndb_plane_three _chem_comp_chir.ndb_plane_three_esd U_riboseC3endo_O3H_O5H_anti_+sc 1 C1* 4 3 sign 2.46 0.06 sign 53.98 1.12 U_riboseC3endo_O3H_O5H_anti_+sc 2 C2* 4 3 sign -2.78 0.05 sign -58.69 1.70 U_riboseC3endo_O3H_O5H_anti_+sc 3 C3* 4 3 sign -2.50 0.08 sign -51.22 2.20 U_riboseC3endo_O3H_O5H_anti_+sc 4 C4* 4 3 sign 2.49 0.06 sign 50.79 1.30 # loop_ _chem_comp_chir_atom.chir_id _chem_comp_chir_atom.enum _chem_comp_chir_atom.comp_id _chem_comp_chir_atom.atom_id 1 1 U_riboseC3endo_O3H_O5H_anti_+sc O4* 1 2 U_riboseC3endo_O3H_O5H_anti_+sc C2* 1 3 U_riboseC3endo_O3H_O5H_anti_+sc N 2 1 U_riboseC3endo_O3H_O5H_anti_+sc C1* 2 2 U_riboseC3endo_O3H_O5H_anti_+sc C3* 2 3 U_riboseC3endo_O3H_O5H_anti_+sc O2* 3 1 U_riboseC3endo_O3H_O5H_anti_+sc C2* 3 2 U_riboseC3endo_O3H_O5H_anti_+sc C4* 3 3 U_riboseC3endo_O3H_O5H_anti_+sc O3* 4 1 U_riboseC3endo_O3H_O5H_anti_+sc C3* 4 2 U_riboseC3endo_O3H_O5H_anti_+sc O4* 4 3 U_riboseC3endo_O3H_O5H_anti_+sc C5* # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.value_dist _chem_comp_bond.value_dist_esd U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 sing 1.3798 0.0096 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 sing 1.3737 0.0081 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 sing 1.3810 0.0102 U_riboseC3endo_O3H_O5H_anti_+sc C4 C5 sing 1.4304 0.0098 U_riboseC3endo_O3H_O5H_anti_+sc C5 C6 doub 1.3370 0.0090 U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 sing 1.3737 0.0088 U_riboseC3endo_O3H_O5H_anti_+sc C2 O2 doub 1.2186 0.0081 U_riboseC3endo_O3H_O5H_anti_+sc C4 O4 doub 1.2314 0.0113 U_riboseC3endo_O3H_O5H_anti_+sc N3 H3 sing . . U_riboseC3endo_O3H_O5H_anti_+sc C5 H5 sing . . U_riboseC3endo_O3H_O5H_anti_+sc C6 H6 sing . . U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* sing 1.5301 0.0131 U_riboseC3endo_O3H_O5H_anti_+sc C1* HA1* sing 1.516 0.008 U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* sing 1.5271 0.0074 U_riboseC3endo_O3H_O5H_anti_+sc C2* HA2* sing 1.516 0.008 U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* sing 1.5196 0.0121 U_riboseC3endo_O3H_O5H_anti_+sc C3* HA3* sing 1.516 0.008 U_riboseC3endo_O3H_O5H_anti_+sc C4* O4* sing 1.4489 0.0094 U_riboseC3endo_O3H_O5H_anti_+sc C4* HA4* sing 1.516 0.008 U_riboseC3endo_O3H_O5H_anti_+sc O4* C1* sing 1.4076 0.0078 U_riboseC3endo_O3H_O5H_anti_+sc C2* O2* sing 1.4201 0.0094 U_riboseC3endo_O3H_O5H_anti_+sc O2* HAO2* sing 1.435 0.013 U_riboseC3endo_O3H_O5H_anti_+sc C3* O3* sing 1.4132 0.0049 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* sing 1.5065 0.0081 U_riboseC3endo_O3H_O5H_anti_+sc C5* O5* sing 1.4133 0.0187 U_riboseC3endo_O3H_O5H_anti_+sc C5* HA5* sing 1.516 0.008 U_riboseC3endo_O3H_O5H_anti_+sc C5* HB5* sing 1.516 0.008 # _chem_link_bond.link_id ribose_pyrimidine _chem_link_bond.atom_id_1 C1* _chem_link_bond.atom_id_2 N1 _chem_link_bond.atom_1_comp_id 1 _chem_link_bond.atom_2_comp_id 2 _chem_link_bond.value_order sing _chem_link_bond.value_dist 1.4865 _chem_link_bond.value_dist_esd 0.0089 # loop_ _chem_comp_angle.comp_id _chem_comp_angle.atom_id_1 _chem_comp_angle.atom_id_2 _chem_comp_angle.atom_id_3 _chem_comp_angle.value_angle _chem_comp_angle.value_angle_esd _chem_comp_angle.value_dist _chem_comp_angle.value_dist_esd U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 C2 121.03 0.51 2.40 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 N3 114.92 0.70 2.32 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 C4 126.96 0.88 2.46 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 C5 114.50 0.87 2.36 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4 C5 C6 119.75 0.74 2.39 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C5 C6 N1 122.69 0.53 2.38 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 O2 122.86 0.71 2.28 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N3 C2 O2 122.21 0.79 2.27 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 O4 119.48 0.78 2.26 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C5 C4 O4 126.01 0.67 2.37 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* C3* 101.03 0.80 2.36 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* C4* 102.21 1.01 2.37 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* O4* 104.10 0.66 2.34 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4* O4* C1* 109.97 0.70 2.34 0.01 U_riboseC3endo_O3H_O5H_anti_+sc O4* C1* C2* 107.59 0.65 2.37 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* O2* 108.24 1.82 2.39 0.03 U_riboseC3endo_O3H_O5H_anti_+sc C3* C2* O2* 110.24 1.94 2.42 0.03 U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* O3* 113.59 1.53 2.46 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C4* C3* O3* 112.68 1.76 2.44 0.03 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* C3* 115.79 1.39 2.56 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* O4* 109.78 1.07 2.42 0.02 U_riboseC3endo_O3H_O5H_anti_+sc O5* C5* C4* 110.66 2.05 2.41 0.03 # loop_ _chem_link_angle.link_id _chem_link_angle.atom_id_1 _chem_link_angle.atom_id_2 _chem_link_angle.atom_id_3 _chem_link_angle.atom_1_comp_id _chem_link_angle.atom_2_comp_id _chem_link_angle.atom_3_comp_id _chem_link_angle.value_angle _chem_link_angle.value_angle_esd _chem_link_angle.value_dist _chem_link_angle.value_dist_esd ribose_pyrimidine C2 N1 C1* 2 2 1 116.62 0.88 2.4400 0.0200 ribose_pyrimidine C6 N1 C1* 2 2 1 122.40 0.89 2.5000 0.0100 ribose_pyrimidine N1 C1* C2* 2 1 1 111.65 0.94 2.5000 0.0100 ribose_pyrimidine N1 C1* O4* 2 1 1 108.88 0.43 2.3600 0.0100 # loop_ _chem_comp_tor.id _chem_comp_tor.comp_id _chem_comp_tor.atom_id_1 _chem_comp_tor.atom_id_2 _chem_comp_tor.atom_id_3 _chem_comp_tor.atom_id_4 N1-C2-N3-C4 U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 N3 C4 C2-N3-C4-C5 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 C4 C5 N3-C4-C5-C6 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 C5 C6 C4-C5-C6-N1 U_riboseC3endo_O3H_O5H_anti_+sc C4 C5 C6 N1 C5-C6-N1-C2 U_riboseC3endo_O3H_O5H_anti_+sc C5 C6 N1 C2 C6-N1-C2-N3 U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 C2 N3 C6-N1-C2-O2 U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 C2 O2 C4-N3-C2-O2 U_riboseC3endo_O3H_O5H_anti_+sc C4 N3 C2 O2 C2-N3-C4-O4 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 C4 O4 C6-C5-C4-O4 U_riboseC3endo_O3H_O5H_anti_+sc C6 C5 C4 O4 C4*-O4*-C1*-C2* U_riboseC3endo_O3H_O5H_anti_+sc C4* O4* C1* C2* O4*-C1*-C2*-C3* U_riboseC3endo_O3H_O5H_anti_+sc O4* C1* C2* C3* C1*-C2*-C3*-C4* U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* C3* C4* C2*-C3*-C4*-O4* U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* C4* O4* C3*-C4*-O4*-C1* U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* O4* C1* C2*-C3*-C4*-C5* U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* C4* C5* C3*-C4*-C5*-O5* U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* C5* O5* O3*-C3*-C4*-C5* U_riboseC3endo_O3H_O5H_anti_+sc O3* C3* C4* C5* O4*-C4*-C3*-O3* U_riboseC3endo_O3H_O5H_anti_+sc O4* C4* C3* O3* O4*-C4*-C5*-O5* U_riboseC3endo_O3H_O5H_anti_+sc O4* C4* C5* O5* C5*-C4*-O4*-C1* U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* O4* C1* C1*-C2*-C3*-O3* U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* C3* O3* O3*-C3*-C2*-O2* U_riboseC3endo_O3H_O5H_anti_+sc O3* C3* C2* O2* # _chem_link_tor.link_id ribose_pyrimidine _chem_link_tor.id chi_anti_C3endo_pyrimidine _chem_link_tor.atom_id_1 O4* _chem_link_tor.atom_id_2 C1* _chem_link_tor.atom_id_3 N1 _chem_link_tor.atom_id_4 C2 _chem_link_tor.atom_1_comp_id 1 _chem_link_tor.atom_2_comp_id 1 _chem_link_tor.atom_3_comp_id 2 _chem_link_tor.atom_4_comp_id 2 # loop_ _chem_comp_tor_value.comp_id _chem_comp_tor_value.tor_id _chem_comp_tor_value.angle _chem_comp_tor_value.angle_esd _chem_comp_tor_value.dist _chem_comp_tor_value.dist_esd U_riboseC3endo_O3H_O5H_anti_+sc N1-C2-N3-C4 0.58 3.18 2.79 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2-N3-C4-C5 359.31 2.81 2.81 0.01 U_riboseC3endo_O3H_O5H_anti_+sc N3-C4-C5-C6 0.24 2.58 2.67 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4-C5-C6-N1 0.28 1.31 2.79 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C5-C6-N1-C2 359.59 2.42 2.81 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C6-N1-C2-N3 360.00 3.54 2.67 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C6-N1-C2-O2 179.92 3.05 3.52 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4-N3-C2-O2 180.66 2.90 3.56 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2-N3-C4-O4 179.58 2.85 3.55 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C6-C5-C4-O4 179.95 2.82 3.55 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4*-O4*-C1*-C2* 3.53 4.87 2.37 0.02 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C1*-C2*-C3* 334.37 3.95 2.34 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C1*-C2*-C3*-C4* 36.70 2.48 2.34 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2*-C3*-C4*-O4* 324.20 2.68 2.37 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C3*-C4*-O4*-C1* 20.45 4.27 2.36 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C2*-C3*-C4*-C5* 203.61 2.82 3.74 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C3*-C4*-C5*-O5* 52.19 4.95 2.93 0.07 U_riboseC3endo_O3H_O5H_anti_+sc O3*-C3*-C4*-C5* 81.27 3.80 3.23 0.03 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C4*-C3*-O3* 201.87 3.83 3.60 0.02 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C4*-C5*-O5* 293.22 4.75 2.91 0.07 U_riboseC3endo_O3H_O5H_anti_+sc C5*-C4*-O4*-C1* 145.01 4.68 3.57 0.02 U_riboseC3endo_O3H_O5H_anti_+sc C1*-C2*-C3*-O3* 158.39 3.34 3.64 0.02 U_riboseC3endo_O3H_O5H_anti_+sc O3*-C3*-C2*-O2* 44.06 3.47 2.77 0.05 # _chem_link_tor_value.link_id ribose_pyrimidine _chem_link_tor_value.tor_id chi_anti_C3endo_pyrimidine _chem_link_tor_value.angle 193.3 _chem_link_tor_value.angle_esd 14.0 _chem_link_tor_value.dist . _chem_link_tor_value.dist_esd . # loop_ _ndb_chem_comp_bond.comp_id _ndb_chem_comp_bond.atom_id_1 _ndb_chem_comp_bond.atom_id_2 _ndb_chem_comp_bond.csd_bond_order _ndb_chem_comp_bond.dbsearch_id _ndb_chem_comp_bond.value_dist_calc _ndb_chem_comp_bond.value_dist _ndb_chem_comp_bond.value_dist_delta U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 '1 ' ura 1.3801 1.3798 -0.0003 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 '1 ' ura 1.3736 1.3737 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 '1 ' ura 1.3805 1.3810 0.0005 U_riboseC3endo_O3H_O5H_anti_+sc C4 C5 '1 ' ura 1.4300 1.4304 0.0004 U_riboseC3endo_O3H_O5H_anti_+sc C5 C6 '2 ' ura 1.3370 1.3370 0.0000 U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 '1 ' ura 1.3740 1.3737 -0.0003 U_riboseC3endo_O3H_O5H_anti_+sc C2 O2 2 ura 1.2186 1.2186 0.0000 U_riboseC3endo_O3H_O5H_anti_+sc C4 O4 2 ura 1.2315 1.2314 -0.0001 U_riboseC3endo_O3H_O5H_anti_+sc N3 H3 1 ura . . . U_riboseC3endo_O3H_O5H_anti_+sc C5 H5 1 ura . . . U_riboseC3endo_O3H_O5H_anti_+sc C6 H6 1 ura . . . U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* 1 ribose 1.5299 1.5301 0.0002 U_riboseC3endo_O3H_O5H_anti_+sc C1* HA1* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* 1 ribose 1.5270 1.5271 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C2* HA2* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* 1 ribose 1.5195 1.5196 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C3* HA3* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc C4* O4* 1 ribose 1.4489 1.4489 0.0000 U_riboseC3endo_O3H_O5H_anti_+sc C4* HA4* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc O4* C1* 1 ribose 1.4076 1.4076 0.0000 U_riboseC3endo_O3H_O5H_anti_+sc C2* O2* 1 ribose 1.4202 1.4201 -0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C2* HAO2* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc C3* O3* '1 A' ribose_C3endo_O3H 1.4131 1.4132 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* 1 ribose 1.5064 1.5065 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C5* O5* '1 A' ribose_C3endo_O5H 1.4132 1.4133 0.0001 U_riboseC3endo_O3H_O5H_anti_+sc C5* HA5* 1 ribose . . . U_riboseC3endo_O3H_O5H_anti_+sc C5* HB5* 1 ribose . . . # _ndb_chem_link_bond.link_id ribose_pyrimidine _ndb_chem_link_bond.dbsearch_id ribose_C3endo_pyrimidine _ndb_chem_link_bond.atom_id_1 C1* _ndb_chem_link_bond.atom_id_2 N1 _ndb_chem_link_bond.atom_1_comp_id 1 _ndb_chem_link_bond.atom_2_comp_id 2 _ndb_chem_link_bond.value_dist_calc 1.4865 _ndb_chem_link_bond.value_dist 1.4865 _ndb_chem_link_bond.value_dist_delta 0.0000 # loop_ _ndb_chem_comp_angle.comp_id _ndb_chem_comp_angle.atom_id_1 _ndb_chem_comp_angle.atom_id_2 _ndb_chem_comp_angle.atom_id_3 _ndb_chem_comp_angle.dbsearch_id _ndb_chem_comp_angle.value_angle_calc _ndb_chem_comp_angle.value_angle _ndb_chem_comp_angle.value_angle_delta U_riboseC3endo_O3H_O5H_anti_+sc C6 N1 C2 ura 120.95 121.03 0.08 U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 N3 ura 115.00 114.92 -0.08 U_riboseC3endo_O3H_O5H_anti_+sc C2 N3 C4 ura 127.02 126.96 -0.06 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 C5 ura 114.49 114.50 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4 C5 C6 ura 119.79 119.75 -0.04 U_riboseC3endo_O3H_O5H_anti_+sc C5 C6 N1 ura 122.75 122.69 -0.06 U_riboseC3endo_O3H_O5H_anti_+sc N1 C2 O2 ura 122.82 122.86 0.04 U_riboseC3endo_O3H_O5H_anti_+sc N3 C2 O2 ura 122.17 122.21 0.04 U_riboseC3endo_O3H_O5H_anti_+sc N3 C4 O4 ura 119.50 119.48 -0.02 U_riboseC3endo_O3H_O5H_anti_+sc C5 C4 O4 ura 126.01 126.01 0.00 U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* C3* ribose 101.02 101.03 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* C4* ribose 102.23 102.21 -0.02 U_riboseC3endo_O3H_O5H_anti_+sc C3* C4* O4* ribose 104.14 104.10 -0.04 U_riboseC3endo_O3H_O5H_anti_+sc C4* O4* C1* ribose 110.02 109.97 -0.05 U_riboseC3endo_O3H_O5H_anti_+sc O4* C1* C2* ribose 107.66 107.59 -0.07 U_riboseC3endo_O3H_O5H_anti_+sc C1* C2* O2* ribose 108.31 108.24 -0.07 U_riboseC3endo_O3H_O5H_anti_+sc C3* C2* O2* ribose 110.23 110.24 0.01 U_riboseC3endo_O3H_O5H_anti_+sc C2* C3* O3* ribose 113.56 113.59 0.03 U_riboseC3endo_O3H_O5H_anti_+sc C4* C3* O3* ribose 112.63 112.68 0.05 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* C3* ribose 115.81 115.79 -0.02 U_riboseC3endo_O3H_O5H_anti_+sc C5* C4* O4* ribose 109.75 109.78 0.03 U_riboseC3endo_O3H_O5H_anti_+sc O5* C5* C4* ribose 110.65 110.66 0.01 # loop_ _ndb_chem_link_angle.link_id _ndb_chem_link_angle.dbsearch_id _ndb_chem_link_angle.atom_id_1 _ndb_chem_link_angle.atom_id_2 _ndb_chem_link_angle.atom_id_3 _ndb_chem_link_angle.atom_1_comp_id _ndb_chem_link_angle.atom_2_comp_id _ndb_chem_link_angle.atom_3_comp_id _ndb_chem_link_angle.value_angle_calc _ndb_chem_link_angle.value_angle _ndb_chem_link_angle.value_angle_delta ribose_pyrimidine ribose_C3endo_pyrimidine C2 N1 C1* 2 2 1 116.1204 116.6200 0.4996 ribose_pyrimidine ribose_C3endo_pyrimidine C6 N1 C1* 2 2 1 121.9234 122.4000 0.4766 ribose_pyrimidine ribose_C3endo_pyrimidine N1 C1* C2* 2 1 1 111.6934 111.6500 -0.0434 ribose_pyrimidine ribose_C3endo_pyrimidine N1 C1* O4* 2 1 1 108.8898 108.8800 -0.0098 # loop_ _ndb_chem_comp_tor.comp_id _ndb_chem_comp_tor.id _ndb_chem_comp_tor.dbsearch_id _ndb_chem_comp_tor.value_angle_calc _ndb_chem_comp_tor.value_angle _ndb_chem_comp_tor.value_angle_delta U_riboseC3endo_O3H_O5H_anti_+sc N1-C2-N3-C4 ura 0.38 0.58 0.20 U_riboseC3endo_O3H_O5H_anti_+sc C2-N3-C4-C5 ura 359.26 359.31 0.05 U_riboseC3endo_O3H_O5H_anti_+sc N3-C4-C5-C6 ura 0.38 0.24 -0.14 U_riboseC3endo_O3H_O5H_anti_+sc C4-C5-C6-N1 ura 0.28 0.28 0.00 U_riboseC3endo_O3H_O5H_anti_+sc C5-C6-N1-C2 ura 359.32 359.59 0.27 U_riboseC3endo_O3H_O5H_anti_+sc C6-N1-C2-N3 ura 0.34 360.00 359.66 U_riboseC3endo_O3H_O5H_anti_+sc C6-N1-C2-O2 ura 180.02 179.92 -0.10 U_riboseC3endo_O3H_O5H_anti_+sc C4-N3-C2-O2 ura 180.70 180.66 -0.04 U_riboseC3endo_O3H_O5H_anti_+sc C2-N3-C4-O4 ura 179.65 179.58 -0.07 U_riboseC3endo_O3H_O5H_anti_+sc C6-C5-C4-O4 ura 179.96 179.95 -0.01 U_riboseC3endo_O3H_O5H_anti_+sc C4*-O4*-C1*-C2* ribose 3.72 3.53 -0.19 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C1*-C2*-C3* ribose 334.16 334.37 0.21 U_riboseC3endo_O3H_O5H_anti_+sc C1*-C2*-C3*-C4* ribose 36.86 36.70 -0.16 U_riboseC3endo_O3H_O5H_anti_+sc C2*-C3*-C4*-O4* ribose 324.15 324.20 0.05 U_riboseC3endo_O3H_O5H_anti_+sc C3*-C4*-O4*-C1* ribose 20.37 20.45 0.08 U_riboseC3endo_O3H_O5H_anti_+sc C2*-C3*-C4*-C5* ribose 203.55 203.61 0.06 U_riboseC3endo_O3H_O5H_anti_+sc C3*-C4*-C5*-O5* all_ribose_gamma 51.53 52.19 0.66 U_riboseC3endo_O3H_O5H_anti_+sc O3*-C3*-C4*-C5* ribose 81.31 81.27 -0.04 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C4*-C3*-O3* ribose 201.91 201.87 -0.04 U_riboseC3endo_O3H_O5H_anti_+sc O4*-C4*-C5*-O5* all_ribose_gamma 294.02 293.22 -0.80 U_riboseC3endo_O3H_O5H_anti_+sc C5*-C4*-O4*-C1* ribose 144.94 145.01 0.07 U_riboseC3endo_O3H_O5H_anti_+sc C1*-C2*-C3*-O3* ribose 158.46 158.39 -0.07 U_riboseC3endo_O3H_O5H_anti_+sc O3*-C3*-C2*-O2* ribose 44.08 44.06 -0.02 # _ndb_chem_link_tor.link_id ribose_pyrimidine _ndb_chem_link_tor.id chi_anti_C3endo_pyrimidine _ndb_chem_link_tor.dbsearch_id C3endo_pyrimidine_anti _ndb_chem_link_tor.value_angle_calc 193.32 _ndb_chem_link_tor.value_angle 193.30 _ndb_chem_link_tor.value_angle_delta -0.02 # loop_ _ndb_dbitem.id _ndb_dbitem.dbsearch_id _ndb_dbitem.molecule_id _ndb_dbitem.r_factor _ndb_dbitem.sigma _ndb_dbitem.compound _ndb_dbitem.citation adypur10 ura 1 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 ura 2 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; aurcpb ura 1 5.50 0.001-0.005A ;2'-ACETYLURIDINE-3',5'-CYCLOPHOSPHATE BENZYL ESTER ; 'W.DEPMEIER,J.ENGELS,K.H.KLASKA 1977, ACTA CRYSTALLOGR.,SECT.B, 33, 2436' benxex ura 1 3.50 0.006-0.010A 1-(2,2-DIMETHYL-1,3-DIOXAN-5-YL)-URACIL ;YU.YU.SAMITOV,I.N.GONCHAROVA,N.P.RAMZAEVA,A.F.MISHNEV,YA.YA.BLEIDELIS 1981, KHIM.GET.SOEDIN.,SSSR,, 1523 ; beurid10 ura 1 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; beurid10 ura 2 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; biyrik ura 1 4.40 0.001-0.005A 1-(2-CARBOXYETHYL)-URACIL 'S.FUJITA,A.TAKENAKA,Y.SASADA 1982, ACTA CRYSTALLOGR.,SECT.B, 38, 2936' bofwic ura 1 4.10 0.001-0.005A '2'-DEOXY-2'-FLUOROURIDINE' 'C.MARCK,B.LESYNG,W.SAENGER 1982, J.MOL.STRUCT., 82, 77' budvur10 ura 1 5.30 0.001-0.005A 'ADENINE 1-(2-CARBOXYETHYL)-URACIL' 'S.FUJITA,A.TAKENAKA,Y.SASADA 1983, BULL.CHEM.SOC.JPN., 56, 2234' bufyik ura 1 2.90 0.001-0.005A '1-(2-CARBOXYETHYL)-URACIL PHENETHYLAMINE' 'T.ISHIDA,K.YAMAMOTO,M.INOUE 1983, BULL.CHEM.SOC.JPN., 56, 955' cekluz ura 1 4.90 0.001-0.005A 'DISODIUM URIDINE DIPHOSPHOGLUCOSE DIHYDRATE' 'Y.SUGAWARA,H.IWASAKI 1984, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 40, 389' ciryux ura 1 4.00 0.001-0.005A '1-(2-CARBAMOYLETHYL)URACIL 3-(2,4-DIOXO-1-PYRIMIDINYL)PROPIONAMIDE' ;S.FUJITA,A.TAKENAKA,R.SASADA 1984, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 40, 1605 ; daurid01 ura 1 3.95 0.001-0.005A ;3',5'-DIACETYLURIDINE (AT -170DEG.C) ; ;R.A.G.DE GRAAFF,G.ADMIRAAL,E.H.KOEN,C.ROMERS 1977, ACTA CRYSTALLOGR.,SECT.B, 33, 2459 ; fecfau ura 1 5.40 0.006-0.010A 1-(C-2-FLUORO-T-4-HYDROXY-C-3-HYDROXYMETHYL-R-1-CYCLOPENTYL)URACIL ;K.BIGGADIKE,A.D.BORTHWICK,A.M.EXALL,B.E.KIRK,S.M.ROBERTS,P.YOUDS,A.M.Z.SLAWIN,D.J.WILLIAMS 1987, J.CHEM.SOC.,CHEM.COMM.,, 255 ; fecfau ura 2 5.40 0.006-0.010A 1-(C-2-FLUORO-T-4-HYDROXY-C-3-HYDROXYMETHYL-R-1-CYCLOPENTYL)URACIL ;K.BIGGADIKE,A.D.BORTHWICK,A.M.EXALL,B.E.KIRK,S.M.ROBERTS,P.YOUDS,A.M.Z.SLAWIN,D.J.WILLIAMS 1987, J.CHEM.SOC.,CHEM.COMM.,, 255 ; funten ura 1 5.10 0.006-0.010A ;TRIETHYLAMMONIUM RP-URIDINE-3',5'-CYCLIC PHOSPHOROTHIOATE ; 'W.HINRICHS,M.STEIFA,W.SAENGER,F.ECKSTEIN 1987, NUCLEIC ACIDS RES., 15, 4945' gathoy ura 1 4.60 0.006-0.010A ;3'-AZIDO-2',3'-DIDEOXYURIDINE (AT 165 DEG.K, ANTIHUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HIV-1) AGENT) CS-87 ; ;P.VAN ROEY,J.M.SALERNO,W.L.DUAX,C.K.CHU,M.K.AHN,R.F.SCHINAZI 1988, J.AM.CHEM.SOC., 110, 2277 ; gidzic10 ura 1 3.80 0.001-0.005A '1-(2-C-METHYL-BETA-D-RIBOFURANOSYL)URACIL DIHYDRATE' ;E.N.TSAPKINA,G.M.DZHAVADOVA,G.V.GURSKAYA,L.N.BEIGEL'MAN,S.N.MIKHAILOV,S.V.LINDEMAN 1988, KRISTALLOGRAFIYA, 33, 1415 ; hihtoh ura 1 5.10 0.006-0.010A ;(2'S,3'S,4'R)-5'-O-BENZOYL-3'-DEOXY-3'BETA-DIETHYLPHOSPHONO-2'-O-T-BUTYLDIMETHYLSILYLURIDINE ; ;W.L.MCELDOON,D.C.SWENSON,D.F.WIEMER 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 1552 ; jikbua ura 1 2.90 0.001-0.005A ;3'-FLUORO-2',3'-DIDEOXYURIDINE 1-(3-FLUORO-2,3-DIDEOXY-BETA-D-ERYTHROPENTOFURANOSYL)URACIL ; ;D.H.EVERAERT,O.M.PEETERS,N.M.BLATON,C.J.DE RANTER,A.VAN AERSCHOT,P.HERDEWIJN 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 898 ; jikbua ura 2 2.90 0.001-0.005A ;3'-FLUORO-2',3'-DIDEOXYURIDINE 1-(3-FLUORO-2,3-DIDEOXY-BETA-D-ERYTHROPENTOFURANOSYL)URACIL ; ;D.H.EVERAERT,O.M.PEETERS,N.M.BLATON,C.J.DE RANTER,A.VAN AERSCHOT,P.HERDEWIJN 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 898 ; jucnok ura 1 5.10 0.006-0.010A ;2'-DEOXY-2'-(S)-PHENYLSULFINYL-URIDINE HEMIHYDRATE ; 'T.HATA,A.MATSUDA,T.MIYASAKA 1991, ANAL.SCI., 7, 989' jucpay ura 1 5.20 0.006-0.010A '2'-DEOXY-2'-(R)-PHENYLSULFINYL-URIDINE' 'T.HATA,A.MATSUDA,T.MIYASAKA 1991, ANAL.SCI., 7, 987' katyot ura 1 3.40 0.001-0.005A '2',3'-DIDEOXYURIDINE' ;P.VAN ROEY,J.M.SALERNO,C.K.CHU,R.F.SCHINAZI 1989, PROC.NAT.ACAD.SCI.USA, 86, 3929 ; kofguh ura 1 3.60 0.001-0.005A 1-((2R,6R)-6-HYDROXYMETHYL-1,4-DIOXAN-2-YL)URACIL ;H.L.DE WINTER,N.M.BLATON,O.M.PEETERS,C.J.DE RANTER,A.VAN AERSCHOT,P.HERDEWIJN 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 2420 ; lyfura ura 1 3.60 0.001-0.005A 1-BETA-D-LYXOFURANOSYLURACIL 'I.EKIEL,E.DARZYNKIEWICZ,G.I.BIRNBAUM,D.SHUGAR 1979, J.AM.CHEM.SOC., 101, 4724' metura01 ura 1 2.30 0.001-0.005A '1-METHYLPYRIMIDINE-2,4-DIONE (AT 15 DEG.K, NEUTRON STUDY) N-METHYLURACIL' 'R.K.MCMULLAN,B.M.CRAVEN 1989, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 45, 270' metura02 ura 1 2.40 0.001-0.005A '1-METHYLPYRIMIDINE-2,4-DIONE (AT 60 DEG.K, NEUTRON STUDY) N-METHYLURACIL' 'R.K.MCMULLAN,B.M.CRAVEN 1989, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 45, 270' metura03 ura 1 2.40 0.001-0.005A '1-METHYLPYRIMIDINE-2,4-DIONE (AT 123 DEG.K, NEUTRON STUDY) N-METHYLURACIL' 'R.K.MCMULLAN,B.M.CRAVEN 1989, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 45, 270' metura04 ura 1 4.70 0.001-0.005A ;1-METHYLURACIL (AT -110 DEG.C, REDETERMINATION OF D.W.GREEN ET AL,J.BIOL.CHEM., 237,3573,1962) ; 'W.MICKLITZ,B.LIPPERT,H.SCHOLLHORN,U.THEWALT 1989, J.HETEROCYCL.CHEM., 26, 1499' mxeurd ura 1 3.50 0.001-0.005A '2',3'-O-METHOXYMETHYLENE-URIDINE' ;A.J.DE KOK,C.ROMERS,H.P.M.DE LEEUW,C.ALTONA,J.H.VAN BOOM 1977, J.CHEM.SOC.,PERKIN TRANS.2,, 487 ; pabkos ura 1 5.70 0.006-0.010A ;1-(5(R)-ACETAMIDO-5,6-DIDEOXY-6-(P-TOLUENESULFONYL)-BETA-D-RIBOHEXOFURANOSYL)URACIL HEMIHYDRATE ; 'S.F.WNUK,N.K.DALLEY,M.J.ROBINS 1991, CAN.J.CHEM., 69, 2104' suromm ura 1 2.50 0.006-0.010A ;SODIUM URIDINE-5'-O-METHYLPHOSPHATE METHANOL SOLVATE ; 'J.D.HOOGENDORP,C.ROMERS 1978, ACTA CRYSTALLOGR.,SECT.B, 34, 2724' thfurc10 ura 1 4.20 0.001-0.005A TETRAHYDROFURANYL-URACIL 'C.H.M.VERDEGAAL,F.B.MARTENS,C.ROMERS 1979, J.CHEM.SOC.,PERKIN TRANS.2,, 833' thpyur ura 1 3.90 0.006-0.010A ;(+)-2'-O-TETRAHYDROPYRANYL-URIDINE (FOR STEREOISOMER SEE JOSCAV) ; 'P.H.STOTHART,I.D.BROWN 1973, ACTA CRYSTALLOGR.,SECT.B, 29, 2237' uraraf01 ura 1 3.00 0.001-0.005A '1-BETA-D-ARABINOFURANOSYL-URACIL (ABSOLUTE CONFIGURATION)' 'J.S.SHERFINSKI,R.E.MARSH 1974, ACTA CRYSTALLOGR.,SECT.B, 30, 873' uraraf10 ura 1 5.80 0.006-0.010A 1-BETA-D-ARABINOFURANOSYL-URACIL 'P.TOLLIN,H.R.WILSON,D.W.YOUNG 1973, ACTA CRYSTALLOGR.,SECT.B, 29, 1641' uridmp10 ura 1 5.10 0.006-0.010A ;URIDINE-3'-MONOPHOSPHATE MONOHYDRATE ; 'T.SRIKRISHNAN,S.M.FRIDEY,R.PARTHASARATHY 1979, J.AM.CHEM.SOC., 101, 3739' vanjez ura 1 5.30 0.006-0.010A '3'-AZIDO-2',3'-DIDEOXY-1-BETA-D-THREO-PENTOFURANOSYLURACIL' 'J.N.LOW,P.TOLLIN 1989, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 45, 664' vomfim ura 1 3.40 0.001-0.005A '2',3'-DIDEOXY-2',3'-ALPHA-METHYLENEURIDINE' ;L.H.KOOLE,S.NEIDLE,M.D.CRAWFORD,A.A.KRAYEVSKI,G.V.GURSKAYA,A.SANDSTROM,JIN-CHANG WU,WEIMIN TONG,J.CHATTOPADHYAYA 1991, J.ORG.CHEM., 56, 6884 ; vomgaf ura 1 5.42 0.006-0.010A ;2'3'-DI-O-ACETYL-5'-(R)-FLUORO-5'-S-(4-METHOXYPHENYL)-5'-THIOURIDINE (ABSOLUTE CONFIGURATION BY ETA REFINEMENT) ; 'M.J.ROBINS,S.F.WNUK,K.B.MULLAH,N.K.DALLEY 1991, J.ORG.CHEM., 56, 6878' voyvag ura 1 6.00 0.006-0.010A ;2'-DEOXY-2'(S-S)-((4-METHOXYPHENYL)SULFINYL)URIDINE (ABSOLUTE CONFIGURATION BY ETA REFINEMENT) ; 'M.J.ROBINS,K.B.MULLAH,S.F.WNUK,N.K.DALLEY 1992, J.ORG.CHEM., 57, 2357' voyvek ura 1 3.60 0.001-0.005A ;3',5'-DI-O-ACETYL-(2'S)-DEOXY-2'-FLUORO-2'-((4-METHOXYPHENYL)SULFINYL)URIDINE (ABSOLUTE CONFIGURATION BY ETA REFINEMENT, MAJOR DIASTEREOISOMER) ; 'M.J.ROBINS,K.B.MULLAH,S.F.WNUK,N.K.DALLEY 1992, J.ORG.CHEM., 57, 2357' voyvio ura 1 5.20 0.001-0.005A '3',5'-DI-O-ACETYL-(2'S)-DEOXY-2'-FLUORO-2'-(4-METHYLSULFONYL)URIDINE' 'M.J.ROBINS,K.B.MULLAH,S.F.WNUK,N.K.DALLEY 1992, J.ORG.CHEM., 57, 2357' vukgox ura 1 4.60 0.001-0.005A '5'-O-ACETYL-4'-CYANO-2',3'-DIDEHYDRO-2',3'-DIDEOXYURIDINE' ;K.YAMAGUCHI,K.HARAGUCHI,H.TANAKA,Y.ITOH,T.MIYASAKA 1992, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 48, 2277 ; waxlem ura 1 4.10 0.006-0.010A '2',3'-DIDEHYDRO-2',3'-DIDEOXYURIDINE' 'P.VAN ROEY,E.W.TAYLOR,C.K.CHU,R.F.SCHINAZI 1993, J.AM.CHEM.SOC., 115, 5365' waxlem ura 2 4.10 0.006-0.010A '2',3'-DIDEHYDRO-2',3'-DIDEOXYURIDINE' 'P.VAN ROEY,E.W.TAYLOR,C.K.CHU,R.F.SCHINAZI 1993, J.AM.CHEM.SOC., 115, 5365' wibwin ura 1 4.70 0.006-0.010A ;1-(1'-ALLYL-3',5'-DI-O-BENZOYL-BETA-D-ARABINOFURANOSYL)URACIL 1-(1'-ALLYL-3',5'-DI-O-BENZOYL-BETA-D-ARABINOFURANOSYL)-2,4(1H,3H)-PYRIMIDINEDIONE ; ;K.YAMAGUCHI,Y.ITO,K.HARAGUCHI,H.TANAKA,T.MIYASAKA 1994, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 50, 1472 ; wirzig ura 1 3.65 0.006-0.010A ;5'-O-BENZOYL-2',3'-DIDEOXY-2'-OXO-ALPHA-URIDINE (POTENTIAL ANTISENSE DRUG) 1-(5-O-BENZOYL-2,3-DIDEOXY-2-OXO-ALPHA-D-RIBOFURANOSYL)-2,4-(1H,3H)-PYRIMIDINEDIONE ; ;C.G.SURESH,K.SAKTHIVEL,T.PATHAK 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 1776 ; yedheu ura 1 2.62 0.001-0.005A '2',5'-BIS(O-TRITYL)-OXIMINOURIDINE' ;P.AGBACK,A.PAPCHIKHIN,S.NEIDLE,J.CHATTOPADHYAYA 1993, NUCLEOSIDES AND NUCLEOTIDES, 12, 605 ; yerdaa ura 1 2.77 0.001-0.005A 1-(1,3-DIDEOXY-2-FLUORO-4-THIO-BETA-D-THREO-PENTOFURANOSYL)URACIL 'L.S.JEONG,M.C.NICKLAUS,C.GEORGE,V.E.MARQUEZ 1994, TETRAHEDRON LETT., 35, 7569' yerdee ura 1 0.00 0.006-0.010A 1-(2,3-DIDEOXY-1-FLUORO-4-THIO-BETA-D-THREO-PENTOFURANOSYL)URACIL 'L.S.JEONG,M.C.NICKLAUS,C.GEORGE,V.E.MARQUEZ 1994, TETRAHEDRON LETT., 35, 7569' yerdee ura 2 0.00 0.006-0.010A 1-(2,3-DIDEOXY-1-FLUORO-4-THIO-BETA-D-THREO-PENTOFURANOSYL)URACIL 'L.S.JEONG,M.C.NICKLAUS,C.GEORGE,V.E.MARQUEZ 1994, TETRAHEDRON LETT., 35, 7569' yerdoo ura 1 3.65 0.006-0.010A 1-(1,3-DIDEOXY-2-FLUORO-4-THIO-BETA-D-ERYTHRO-PENTOFURANOSYL)URACIL 'L.S.JEONG,M.C.NICKLAUS,C.GEORGE,V.E.MARQUEZ 1994, TETRAHEDRON LETT., 35, 7573' yerduu ura 1 2.99 0.001-0.005A 1-(2,3-DIDEOXY-1-FLUORO-4-THIO-BETA-D-ERYTHRO-PENTOFURANOSYL)URACIL 'L.S.JEONG,M.C.NICKLAUS,C.GEORGE,V.E.MARQUEZ 1994, TETRAHEDRON LETT., 35, 7573' yibdoc ura 1 5.00 0.006-0.010A '2',3',5'-TRIACETOXY-5'-PROP-2-ENYL-URIDINE' ;K.HARAGUCHI,H.TANAKA,S.SAITO,K.YAMAGUCHI,T.MIYASAKA 1994, TETRAHEDRON LETT., 35, 9721 ; yogyoi ura 1 4.00 0.001-0.005A TRANS-4(R,S)-HYDROXYMETHYL-2(S,R)-(URACIL-1-YLMETHYL)-1,3-DIOXOLANE ;A.V.BOCHKAREV,E.V.EFIMTSEVA,S.N.MIKHAILOV,G.V.GURSKAYA 1994, KRISTALLOGRAFIYA, 39, 635 ; zamtem ura 1 3.70 0.001-0.005A ;3'-ISOCYANO-2',3'-DIDEOXYURIDINE (POSSIBLE ANTI-HIV ACTIVITY) ; 'A.K.DAS,S.K.MAZUMDAR 1995, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 51, 1652' zodxev ura 1 4.40 0.006-0.010A ;1-((2R,4R,5S)-4,5-DIETHYNYL-TETRAHYDROFURAN-2-YL)PYRIMIDINE-2,4-(1H,3H)-DIONE 3',4'-DIETHYNYLTRIDEOXYNORURIDINE ; 'M.A.AMIN,H.STOECKLI-EVANS,A.GOSSAUER 1995, HELV.CHIM.ACTA, 78, 1879' zzzapa10 ura 1 3.40 0.006-0.010A '2',3'-O-ISOPROPYLIDENE-URIDINE' 'S.K.KATTI,T.P.SESHADRI,M.A.VISWAMITRA 1981, ACTA CRYSTALLOGR.,SECT.B, 37, 407' adenos01 ribose 1 4.40 0.001-0.005A 'ADENOSINE (NEUTRON DIFFRACTION AT 123 DEG.K)' ;W.T.KLOOSTER,J.R.RUBLE,B.M.CRAVEN,R.K.MCMULLAN 1991, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 47, 376 ; admpot10 ribose 1 2.90 0.001-0.005A ;ADENOSINE-5'-METHYLPHOSPHONATE HEMIHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1724' adposd ribose 1 4.30 0.006-0.010A ;ADENOSINE-3'-PHOSPHATE DIHYDRATE ; 'M.SUNDARALINGAM 1966, ACTA CRYSTALLOGR., 21, 495' adypur10 ribose 2 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 ribose 3 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 ribose 4 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; apapad10 ribose 1 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' apapad10 ribose 2 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' apapad10 ribose 3 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' beurid10 ribose 1 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; beurid10 ribose 2 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; cupyuh ribose 1 3.40 0.001-0.005A 'CYTIDINE-5'-O-DIMETHYLPHOSPHATE' 'R.G.BRENNAN,N.S.KONDO,M.SUNDARALINGAM 1984, NUCLEIC ACIDS RES., 12, 6813' cytidi01 ribose 1 2.87 0.001-0.005A '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE BETA-CYTIDINE' 'D.L.WARD 1993, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 49, 1789' cytidi02 ribose 1 5.40 0.001-0.005A 'BETA-CYTIDINE (AT 123 DEG.K, HIGH RESOLUTION REFINEMENT.)' 'LIRONG CHEN,B.M.CRAVEN 1995, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 51, 1081' cytidn ribose 1 2.60 0.006-0.010A 'CYTIDINIUM NITRATE' ;J.J.GUY,L.R.NASSIMBENI,G.M.SHELDRICK,R.TAYLOR 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 2909 ; gaknov ribose 1 4.20 0.001-0.005A '3-BETA-D-RIBOFURANOSYLADENINE 3-ISOADENOSINE' ;S.KUMAR,S.R.WILSON,N.J.LEONARD 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 508 ; guanph01 ribose 1 3.00 0.001-0.005A ;GUANOSINE-5'-MONOPHOSPHATE TRIHYDRATE (REDETERMINATION OF MURAYAMA ET AL,ACTA CRYST.,B25,2236,1969) ; 'J.EMERSON,M.SUNDARALINGAM 1980, ACTA CRYSTALLOGR.,SECT.B, 36, 1510' hifkem ribose 1 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; hifkem ribose 2 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; jucjas ribose 1 6.53 0.006-0.010A '5-CARBOXYMETHYLAMINOMETHYLURIDINE MONOHYDRATE' 'Z.GALDECKI,B.LUCIAK,A.MALKIEWICZ,B.NAWROT 1991, MONATSH.CHEM., 122, 487' meurid ribose 1 7.50 0.006-0.010A '5-METHYLURIDINE HEMIHYDRATE' 'D.J.HUNT,E.SUBRAMANIAN 1969, ACTA CRYSTALLOGR.,SECT.B, 25, 2144' mxurid01 ribose 1 3.10 0.001-0.005A 5-METHOXYURIDINE 'G.I.BIRNBAUM,W.J.P.BLONSKI,F.E.HRUSKA 1983, CAN.J.CHEM., 61, 2299' pucglr10 ribose 1 4.60 0.006-0.010A N-6--(N-GLYCYLCARBONYL)ADENOSINE 'R.PARTHASARATHY,J.M.OHRT,G.B.CHHEDA 1977, BIOCHEMISTRY, 16, 4999' taljar ribose 1 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; taljar ribose 2 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; uroame ribose 1 4.00 0.006-0.010A 'URIDINE-5-OXYACETIC ACID METHYL ESTER MONOHYDRATE' 'K.MORIKAWA,K.TORII,Y.IITAKA,M.TSUBOI 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 1004' adenos01 ribose_C3endo_O3H 1 4.40 0.001-0.005A 'ADENOSINE (NEUTRON DIFFRACTION AT 123 DEG.K)' ;W.T.KLOOSTER,J.R.RUBLE,B.M.CRAVEN,R.K.MCMULLAN 1991, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 47, 376 ; admpot10 ribose_C3endo_O3H 1 2.90 0.001-0.005A ;ADENOSINE-5'-METHYLPHOSPHONATE HEMIHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1724' admpot10 ribose_C3endo_O3H 2 2.90 0.001-0.005A ;ADENOSINE-5'-METHYLPHOSPHONATE HEMIHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1724' adypur10 ribose_C3endo_O3H 3 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 ribose_C3endo_O3H 4 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; apapad10 ribose_C3endo_O3H 2 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' beurid10 ribose_C3endo_O3H 1 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; beurid10 ribose_C3endo_O3H 2 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; cupyuh ribose_C3endo_O3H 1 3.40 0.001-0.005A 'CYTIDINE-5'-O-DIMETHYLPHOSPHATE' 'R.G.BRENNAN,N.S.KONDO,M.SUNDARALINGAM 1984, NUCLEIC ACIDS RES., 12, 6813' cytidi01 ribose_C3endo_O3H 1 2.87 0.001-0.005A '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE BETA-CYTIDINE' 'D.L.WARD 1993, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 49, 1789' cytidi02 ribose_C3endo_O3H 1 5.40 0.001-0.005A 'BETA-CYTIDINE (AT 123 DEG.K, HIGH RESOLUTION REFINEMENT.)' 'LIRONG CHEN,B.M.CRAVEN 1995, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 51, 1081' cytidn ribose_C3endo_O3H 1 2.60 0.006-0.010A 'CYTIDINIUM NITRATE' ;J.J.GUY,L.R.NASSIMBENI,G.M.SHELDRICK,R.TAYLOR 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 2909 ; gaknov ribose_C3endo_O3H 1 4.20 0.001-0.005A '3-BETA-D-RIBOFURANOSYLADENINE 3-ISOADENOSINE' ;S.KUMAR,S.R.WILSON,N.J.LEONARD 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 508 ; guanph01 ribose_C3endo_O3H 1 3.00 0.001-0.005A ;GUANOSINE-5'-MONOPHOSPHATE TRIHYDRATE (REDETERMINATION OF MURAYAMA ET AL,ACTA CRYST.,B25,2236,1969) ; 'J.EMERSON,M.SUNDARALINGAM 1980, ACTA CRYSTALLOGR.,SECT.B, 36, 1510' hifkem ribose_C3endo_O3H 1 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; hifkem ribose_C3endo_O3H 2 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; jucjas ribose_C3endo_O3H 1 6.53 0.006-0.010A '5-CARBOXYMETHYLAMINOMETHYLURIDINE MONOHYDRATE' 'Z.GALDECKI,B.LUCIAK,A.MALKIEWICZ,B.NAWROT 1991, MONATSH.CHEM., 122, 487' meurid ribose_C3endo_O3H 1 7.50 0.006-0.010A '5-METHYLURIDINE HEMIHYDRATE' 'D.J.HUNT,E.SUBRAMANIAN 1969, ACTA CRYSTALLOGR.,SECT.B, 25, 2144' mxurid01 ribose_C3endo_O3H 1 3.10 0.001-0.005A 5-METHOXYURIDINE 'G.I.BIRNBAUM,W.J.P.BLONSKI,F.E.HRUSKA 1983, CAN.J.CHEM., 61, 2299' pucglr10 ribose_C3endo_O3H 1 4.60 0.006-0.010A N-6--(N-GLYCYLCARBONYL)ADENOSINE 'R.PARTHASARATHY,J.M.OHRT,G.B.CHHEDA 1977, BIOCHEMISTRY, 16, 4999' taljar ribose_C3endo_O3H 1 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; taljar ribose_C3endo_O3H 2 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; uroame ribose_C3endo_O3H 1 4.00 0.006-0.010A 'URIDINE-5-OXYACETIC ACID METHYL ESTER MONOHYDRATE' 'K.MORIKAWA,K.TORII,Y.IITAKA,M.TSUBOI 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 1004' adenos01 ribose_C3endo_O5H 1 4.40 0.001-0.005A 'ADENOSINE (NEUTRON DIFFRACTION AT 123 DEG.K)' ;W.T.KLOOSTER,J.R.RUBLE,B.M.CRAVEN,R.K.MCMULLAN 1991, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 47, 376 ; adposd ribose_C3endo_O5H 1 4.30 0.006-0.010A ;ADENOSINE-3'-PHOSPHATE DIHYDRATE ; 'M.SUNDARALINGAM 1966, ACTA CRYSTALLOGR., 21, 495' adypur10 ribose_C3endo_O5H 1 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 ribose_C3endo_O5H 2 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; apapad10 ribose_C3endo_O5H 3 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' beurid10 ribose_C3endo_O5H 1 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; beurid10 ribose_C3endo_O5H 2 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; cytidi01 ribose_C3endo_O5H 1 2.87 0.001-0.005A '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE BETA-CYTIDINE' 'D.L.WARD 1993, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 49, 1789' cytidi02 ribose_C3endo_O5H 1 5.40 0.001-0.005A 'BETA-CYTIDINE (AT 123 DEG.K, HIGH RESOLUTION REFINEMENT.)' 'LIRONG CHEN,B.M.CRAVEN 1995, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 51, 1081' cytidn ribose_C3endo_O5H 1 2.60 0.006-0.010A 'CYTIDINIUM NITRATE' ;J.J.GUY,L.R.NASSIMBENI,G.M.SHELDRICK,R.TAYLOR 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 2909 ; gaknov ribose_C3endo_O5H 1 4.20 0.001-0.005A '3-BETA-D-RIBOFURANOSYLADENINE 3-ISOADENOSINE' ;S.KUMAR,S.R.WILSON,N.J.LEONARD 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 508 ; jucjas ribose_C3endo_O5H 1 6.53 0.006-0.010A '5-CARBOXYMETHYLAMINOMETHYLURIDINE MONOHYDRATE' 'Z.GALDECKI,B.LUCIAK,A.MALKIEWICZ,B.NAWROT 1991, MONATSH.CHEM., 122, 487' meurid ribose_C3endo_O5H 1 7.50 0.006-0.010A '5-METHYLURIDINE HEMIHYDRATE' 'D.J.HUNT,E.SUBRAMANIAN 1969, ACTA CRYSTALLOGR.,SECT.B, 25, 2144' mxurid01 ribose_C3endo_O5H 1 3.10 0.001-0.005A 5-METHOXYURIDINE 'G.I.BIRNBAUM,W.J.P.BLONSKI,F.E.HRUSKA 1983, CAN.J.CHEM., 61, 2299' pucglr10 ribose_C3endo_O5H 1 4.60 0.006-0.010A N-6--(N-GLYCYLCARBONYL)ADENOSINE 'R.PARTHASARATHY,J.M.OHRT,G.B.CHHEDA 1977, BIOCHEMISTRY, 16, 4999' taljar ribose_C3endo_O5H 1 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; taljar ribose_C3endo_O5H 2 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; uroame ribose_C3endo_O5H 1 4.00 0.006-0.010A 'URIDINE-5-OXYACETIC ACID METHYL ESTER MONOHYDRATE' 'K.MORIKAWA,K.TORII,Y.IITAKA,M.TSUBOI 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 1004' dinyii10 all_ribose_gamma 1 4.10 0.006-0.010A ;SODIUM BIS(DEOXYCYTIDYLYL-(3'-5')-DEOXYGUANOSINE) DINUCLEOTIDE HEPTAHYDRATE ; 'M.COLL,X.SOLANS,M.FONT-ALTABA,J.A.SUBIRANA 1987, J.BIOMOL.STRUCT.DYN., 4, 797' dinyii10 all_ribose_gamma 2 4.10 0.006-0.010A ;SODIUM BIS(DEOXYCYTIDYLYL-(3'-5')-DEOXYGUANOSINE) DINUCLEOTIDE HEPTAHYDRATE ; 'M.COLL,X.SOLANS,M.FONT-ALTABA,J.A.SUBIRANA 1987, J.BIOMOL.STRUCT.DYN., 4, 797' dinyii10 all_ribose_gamma 3 4.10 0.006-0.010A ;SODIUM BIS(DEOXYCYTIDYLYL-(3'-5')-DEOXYGUANOSINE) DINUCLEOTIDE HEPTAHYDRATE ; 'M.COLL,X.SOLANS,M.FONT-ALTABA,J.A.SUBIRANA 1987, J.BIOMOL.STRUCT.DYN., 4, 797' dinyii10 all_ribose_gamma 4 4.10 0.006-0.010A ;SODIUM BIS(DEOXYCYTIDYLYL-(3'-5')-DEOXYGUANOSINE) DINUCLEOTIDE HEPTAHYDRATE ; 'M.COLL,X.SOLANS,M.FONT-ALTABA,J.A.SUBIRANA 1987, J.BIOMOL.STRUCT.DYN., 4, 797' duhhuj all_ribose_gamma 1 2.70 0.001-0.005A ;5-METHOXYMETHYL-2'-DEOXYURIDINE (ANTIVIRAL AGENT) ; ;O.A.L.EL-KABBANI,I.EKIEL,L.T.J.DELBAERE,G.TOURIGNY,A.L.STUART,S.V.GUPTA 1986, NUCLEOSIDES AND NUCLEOTIDES, 5, 95 ; dumtou all_ribose_gamma 1 4.20 0.001-0.005A (-)-CIS-(5S,6S)-5-HYDROXY-5-METHYL-6-ETHYLAMINO-5,6-DIHYDROTHYMIDINE ;T.HARAYAMA,R.YANADA,T.TAGA,K.MACHIDA,J.CADET,F.YONEDA 1986, J.CHEM.SOC.,CHEM.COMM.,, 1469 ; dumtou10 all_ribose_gamma 1 3.60 0.001-0.005A (5S,6S)-CIS-(+)-6-ETHYLAMINO-5-HYDROXY-5,6-DIHYDROTHYMIDINE ;T.HARAYAMA,R.YANADA,M.TANAKA,T.TAGA,K.MACHIDA,F.YONEDA,J.CADET 1988, J.CHEM.SOC.,PERKIN TRANS.1,, 2555 ; fmdurd02 all_ribose_gamma 1 3.30 0.006-0.010A '5-TRIFLUOROMETHYL-2'-DEOXYURIDINE' 'T.SATO 1989, ANAL.SCI., 5, 117' foylua all_ribose_gamma 1 4.40 0.001-0.005A '3'-O-ACETYL-2'-DEOXYADENOSINE' ;J.N.LOW,P.TOLLIN,R.A.HOWIE 1987, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 43, 2184 ; gexxiq all_ribose_gamma 1 4.90 0.001-0.005A ;3'-O-ACETYLTHYMIDINE (ORTHORHOMBIC FORM) ; ;R.S.ECCLESTON,C.C.WILSON,R.A.HOWIE 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 1424 ; gexxiq01 all_ribose_gamma 1 5.00 0.006-0.010A ;3'-O-ACETYLTHYMIDINE (HEXAGONAL FORM) ; 'A.SCHOUTEN,J.A.KANTERS 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1320' ipdxur all_ribose_gamma 1 6.10 0.001-0.005A 'BETA-5-ISOPROPYL-2'-DEOXYURIDINE' ;M.CZUGLER,A.KALMAN,J.T.SAGI,A.SZABOLCS,L.OTVOS 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1626 ; ipdxur01 all_ribose_gamma 1 6.10 0.001-0.005A 'BETA-5-ISOPROPYL-2'-DEOXYURIDINE' 'C.MATYAS,K.ALAKOS 1993, ACTA PHARM.HUNG., 63, 193' jafhih all_ribose_gamma 2 3.10 0.001-0.005A ;2'-DEOXY-3',5'-DI-O-ACETYL GUANOSINE ; 'L.H.KOOLE,H.M.BUCK,J.A.KANTERS,A.SCHOUTEN 1988, CAN.J.CHEM., 66, 2634' jibdih all_ribose_gamma 1 3.00 0.001-0.005A ;2'-DEOXYCYTIDINIUM DIHYDROGENPHOSPHATE ; 'M.JASKOLSKI 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 153' jubvor all_ribose_gamma 1 4.37 0.001-0.005A ;1-(2'-DEOXY-BETA-D-RIBOFURANOSYL)-6,7-DIPHENYL-LUMAZINE (AT 183 DEG.K) ; ;XIAODONG CAO,W.PFLEIDERER,H.ROSEMEYER,F.SEELA,W.BANNWARTH,P.SCHONHOLZER 1992, HELV.CHIM.ACTA, 75, 1267 ; keclot all_ribose_gamma 1 4.30 0.006-0.010A ;8-AMINO-3,10-DIHYDRO-10-OXO-3-(BETA-D-2-DEOXYRIBOFURANOSYL)-3H-1,3,5-TRIAZINO(1,2-A)PURINE MONOHYDRATE DIDA'-METAMORPHOSINE MONOHYDRATE ; 'S.KUMAR,F.T.OAKES,S.R.WILSON,N.J.LEONARD 1988, HETEROCYCLES, 27, 2891' poggat all_ribose_gamma 1 4.20 0.006-0.010A ;BIS(2'-DEOXYCYTIDINE) DIHYDROGEN PHOSPHATE ; ;M.JASKOLSKI,M.GDANIEC,M.GILSKI,M.ALEJSKA,M.D.BRATEK-WIEWIOROWSKA 1994, J.BIOMOL.STRUCT.DYN., 11, 1287 ; poggat all_ribose_gamma 2 4.20 0.006-0.010A ;BIS(2'-DEOXYCYTIDINE) DIHYDROGEN PHOSPHATE ; ;M.JASKOLSKI,M.GDANIEC,M.GILSKI,M.ALEJSKA,M.D.BRATEK-WIEWIOROWSKA 1994, J.BIOMOL.STRUCT.DYN., 11, 1287 ; poggat all_ribose_gamma 3 4.20 0.006-0.010A ;BIS(2'-DEOXYCYTIDINE) DIHYDROGEN PHOSPHATE ; ;M.JASKOLSKI,M.GDANIEC,M.GILSKI,M.ALEJSKA,M.D.BRATEK-WIEWIOROWSKA 1994, J.BIOMOL.STRUCT.DYN., 11, 1287 ; poggat all_ribose_gamma 4 4.20 0.006-0.010A ;BIS(2'-DEOXYCYTIDINE) DIHYDROGEN PHOSPHATE ; ;M.JASKOLSKI,M.GDANIEC,M.GILSKI,M.ALEJSKA,M.D.BRATEK-WIEWIOROWSKA 1994, J.BIOMOL.STRUCT.DYN., 11, 1287 ; pryurd10 all_ribose_gamma 1 2.70 0.006-0.010A '5-(2-PROPYNYLOXY)-2'-DEOXYURIDINE' 'G.S.D.KING,L.SENGIER-ROBERTS 1982, J.CHEM.RES., 25, 722' sifkex all_ribose_gamma 1 2.80 0.001-0.005A ;5-((1S,2S)-2-CHLOROCYCLOPROPYL)-1-(2-DEOXY-BETA-D-RIBOFURANOSYL)URACIL (ABSOLUTE CONFIGURATION) ; ;S.C.MOSIMANN,B.D.SANTARSIERO,M.N.G.JAMES,M.TANDON,L.I.WIEBE,E.E.KNAUS 1990, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 46, 2115 ; vexdor all_ribose_gamma 1 4.40 0.001-0.005A ;5-METHOXYMETHYL-2'-DEOXYCYTIDINE (ANTIVIRAL AGENT) MMDCYD ; ;ZONGCHAO JIA,G.TOURIGNY,L.T.J.DELBAERE,A.L.STUART,S.V.GUPTA 1990, CAN.J.CHEM., 68, 836 ; vexdor all_ribose_gamma 2 4.40 0.001-0.005A ;5-METHOXYMETHYL-2'-DEOXYCYTIDINE (ANTIVIRAL AGENT) MMDCYD ; ;ZONGCHAO JIA,G.TOURIGNY,L.T.J.DELBAERE,A.L.STUART,S.V.GUPTA 1990, CAN.J.CHEM., 68, 836 ; zasquf all_ribose_gamma 1 3.80 0.001-0.005A ;3'-O-METHYLTHIOMETHYLTHYMIDINE MONOHYDRATE (POTENTIAL INHIBITORY ACTIVITY AGAINST HIV) ; ;V.A.BOCHKAREV,S.G.ZAVGORODNY,A.S.ZHDANOV,G.V.GURSKAYA 1995, BIOORG.KHIM., 21, 206 ; zasram all_ribose_gamma 1 2.80 0.001-0.005A ;3'-O-METHYLSULFINYLMETHYLTHYMIDINE (POTENTIAL INHIBITORY ACTIVITY AGAINST HIV) ; ;V.A.BOCHKAREV,S.G.ZAVGORODNY,A.S.ZHDANOV,G.V.GURSKAYA 1995, BIOORG.KHIM., 21, 206 ; zedhiz all_ribose_gamma 1 5.40 0.006-0.010A ;(1S,6S)-6,7,7,8,8-PENTAMETHYL-2-(BETA-D-2-DEOXYRIBOFURANOSYL)-CIS-2,4-DIAZABICYCLO(4.2.0)OCTANE-3,5-DIONE ; 'N.HAGA,I.ISHIKAWA,H.TAKAYANAGI,H.OGURA 1994, BULL.CHEM.SOC.JPN., 67, 728' docytc all_ribose_gamma 1 3.50 0.001-0.005A ;2'-DEOXYCYTIDINE HYDROCHLORIDE (ABSOLUTE CONFIGURATION) ; 'E.SUBRAMANIAN,D.J.HUNT 1970, ACTA CRYSTALLOGR.,SECT.B, 26, 303' gidtiw all_ribose_gamma 1 4.20 0.006-0.010A 'N-4--(UREIDOCARBONYL)-2'DEOXYCYTIDINE' 'S.KUMAR,N.J.LEONARD 1988, J.ORG.CHEM., 53, 3959' zozvuf all_ribose_gamma 1 4.56 0.001-0.005A ;(4-AMINO-1-(2-DEOXY-BETA-D-RIBOFURANOSYL)-2-OXO-1H-3-PYRIMIDINIO)(CYANO)BORATE MONOHYDRATE (IN VIVO ANTINEOPLASTIC ACTIVITY AGAINST VARIOUS TUMORS, WITH POTENTIAL USE IN BORON NEUTRON-CAPTURE THERAPY FOR BRAIN CANCER) 2'-DEOXYCYTIDINE-N(3)-CYANOBORANE MONOHYDRATE ; ;P.SINGH,M.ZOTTOLA,SAQING HUANG,B.R.SHAW,L.G.PEDERSEN 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 693 ; acados all_ribose_gamma 1 4.10 0.006-0.010A '3'-O-ACETYLADENOSINE' 'S.T.RAO,M.SUNDARALINGAM 1970, J.AM.CHEM.SOC., 92, 4963' adoshc all_ribose_gamma 1 3.70 0.001-0.005A 'ADENOSINE HYDROCHLORIDE' 'K.SHIKATA,T.UEKI,T.MITSUI 1973, ACTA CRYSTALLOGR.,SECT.B, 29, 31' amurid all_ribose_gamma 1 7.60 0.006-0.010A 5-AMINOURIDINE 'E.EGERT,H.J.LINDNER,W.HILLEN,H.G.GASSEN 1978, ACTA CRYSTALLOGR.,SECT.B, 34, 2204' bibxit all_ribose_gamma 1 5.10 0.006-0.010A '4-AMINO-1-BETA-D-RIBOFURANOSYL-PYRIMIDINE-2,6(1H,3H)-DIONE MONOHYDRATE' 'J.GORSKI,P.TOLLIN 1982, CRYST.STRUCT.COMMUN., 11, 543' bimfei10 all_ribose_gamma 1 3.70 0.001-0.005A 1,N-6--ETHENOADENOSINE 'M.JASKOLSKI 1982, ACTA CRYSTALLOGR.,SECT.B, 38, 3171' bimfim10 all_ribose_gamma 1 4.50 0.001-0.005A '1,N-6--ETHENOADENOSINE HYDROCHLORIDE' 'M.JASKOLSKI 1984, J.CRYSTALLOGR.SPECTROSC.RES., 14, 45' clurid10 all_ribose_gamma 1 3.15 0.001-0.005A 5-CHLOROURIDINE 'S.W.HAWKINSON,C.L.COULTER 1971, ACTA CRYSTALLOGR.,SECT.B, 27, 34' coczid all_ribose_gamma 1 3.90 0.001-0.005A 'ADENOSINE-5'-O-DIETHYL-PHOSPHATE' 'R.G.BRENNAN,N.S.KONDO,M.SUNDARALINGAM 1984, J.AM.CHEM.SOC., 106, 5671' coxnei all_ribose_gamma 1 3.10 0.001-0.005A '8-CHLORO-GUANOSINE DIHYDRATE' 'G.I.BIRNBAUM,P.LASSOTA,D.SHUGAR 1984, BIOCHEMISTRY, 23, 5048' cutvao all_ribose_gamma 1 3.90 0.001-0.005A XANTHOSINE 'B.LESYNG,C.MARCK,W.SAENGER 1984, Z.NATURFORSCH.,TEIL C, 39, 720' cytiac01 all_ribose_gamma 1 7.30 0.006-0.010A ;CYTIDINE-3'-PHOSPHATE (MONOCLINIC FORM) CYTIDYLIC ACID B ; 'C.E.BUGG,R.E.MARSH 1967, J.MOL.BIOL., 25, 67' cyticl all_ribose_gamma 1 2.80 0.001-0.005A 'CYTIDINIUM CHLORIDE' 'A.MOSSET,J.J.BONNET,J.GALY 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1908' demxey all_ribose_gamma 1 5.30 0.006-0.010A '8-METHYLGUANOSINE TRIHYDRATE' ;K.HAMADA,I.HONDA,S.FUJII,T.FUJIWARA,K.-I.TOMITA 1985, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 41, 1486 ; dotxuf10 all_ribose_gamma 1 5.70 0.001-0.005A ;TRYPTAMINIUM 7-METHYLGUANOSINE 5'-MONOPHOSPHATE TRIHYDRATE ; 'T.ISHIDA,M.DOI,H.UEDA,M.INOUE,G.M.SHELDRICK 1988, J.AM.CHEM.SOC., 110, 2286' fucwij all_ribose_gamma 1 4.90 0.001-0.005A 'N-6--DIDEHYDRO-1,6-DIHYDRO-1-METHYLADENOSINE TRIHYDRATE' 'Y.YAMAGATA,K.-I.TOMITA 1987, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 43, 2117' gicmou all_ribose_gamma 1 4.10 0.001-0.005A 'N-4--AMINOCYTIDINE HEMIHYDRATE (MUTAGENIC ACTIVITY)' ;S.KASHINO,K.NEGISHI,H.HAYATSU 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 1454 ; gicmou all_ribose_gamma 2 4.10 0.001-0.005A 'N-4--AMINOCYTIDINE HEMIHYDRATE (MUTAGENIC ACTIVITY)' ;S.KASHINO,K.NEGISHI,H.HAYATSU 1988, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 44, 1454 ; guansh10 all_ribose_gamma 1 3.60 0.001-0.005A 'GUANOSINE DIHYDRATE' 'U.THEWALT,C.E.BUGG,R.E.MARSH 1970, ACTA CRYSTALLOGR.,SECT.B, 26, 1089' guansh10 all_ribose_gamma 2 3.60 0.001-0.005A 'GUANOSINE DIHYDRATE' 'U.THEWALT,C.E.BUGG,R.E.MARSH 1970, ACTA CRYSTALLOGR.,SECT.B, 26, 1089' guopna10 all_ribose_gamma 1 5.60 0.006-0.010A ;DISODIUM GUANOSINE-5'-PHOSPHATE HEPTAHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1982, ACTA CRYSTALLOGR.,SECT.B, 38, 812' guopna10 all_ribose_gamma 2 5.60 0.006-0.010A ;DISODIUM GUANOSINE-5'-PHOSPHATE HEPTAHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1982, ACTA CRYSTALLOGR.,SECT.B, 38, 812' guopna11 all_ribose_gamma 1 5.70 0.006-0.010A ;DISODIUM GUANOSINE-5'-PHOSPHATE HEPTAHYDRATE ; 'S.K.KATTI,T.P.SESHADRI,M.A.VISWAMITRA 1981, ACTA CRYSTALLOGR.,SECT.B, 37, 1825' guopna11 all_ribose_gamma 2 5.70 0.006-0.010A ;DISODIUM GUANOSINE-5'-PHOSPHATE HEPTAHYDRATE ; 'S.K.KATTI,T.P.SESHADRI,M.A.VISWAMITRA 1981, ACTA CRYSTALLOGR.,SECT.B, 37, 1825' hipads all_ribose_gamma 1 3.10 0.001-0.005A '8-(ALPHA-HYDROXYISOPROPYL)-ADENOSINE DIHYDRATE' 'G.I.BIRNBAUM,D.SHUGAR 1978, BIOCHIM.BIOPHYS.ACTA, 517, 500' hxurid all_ribose_gamma 1 2.60 0.001-0.005A 5-HYDROXYURIDINE 'U.THEWALT,C.E.BUGG 1973, ACTA CRYSTALLOGR.,SECT.B, 29, 1393' jawjia all_ribose_gamma 1 2.96 0.001-0.005A '7-METHYL-8-OXO-7,8-DIHYDROGUANOSINE MONOHYDRATE' ;S.B.LARSON,H.B.COTTAM,R.K.ROBINS 1989, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 45, 1979 ; kehzay all_ribose_gamma 1 2.86 0.001-0.005A ;2-AMINO-7-METHYL-9-(BETA-D-RIBOFURANOSYL)-8(9H)-THIOXOPURIN-6(1H)-ONE MONOHYDRATE (IMMUNE SYSTEM STIMULATORY ACTION) ; ;S.B.LARSON,E.M.HENRY,G.D.KINI,R.K.ROBINS 1990, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 46, 506 ; kurdmp all_ribose_gamma 1 3.50 0.001-0.005A ;POTASSIUM DIHYDROURIDINE-3'-MONOPHOSPHATE HEMIHYDRATE ; 'J.EMERSON,M.SUNDARALINGAM 1980, ACTA CRYSTALLOGR.,SECT.B, 36, 537' lumzrf01 all_ribose_gamma 1 5.90 0.001-0.005A 6,7-DIMETHYL-N-1-BETA-D-RIBOFURANOSYL-LUMAZINE 'W.SAENGER,G.RITZMANN,W.PFLEIDERER 1977, ACTA CRYSTALLOGR.,SECT.B, 33, 2989' lumzrf01 all_ribose_gamma 2 5.90 0.001-0.005A 6,7-DIMETHYL-N-1-BETA-D-RIBOFURANOSYL-LUMAZINE 'W.SAENGER,G.RITZMANN,W.PFLEIDERER 1977, ACTA CRYSTALLOGR.,SECT.B, 33, 2989' pctrib10 all_ribose_gamma 1 4.10 0.001-0.005A N-6--(N-THREONYLCARBONYL)ADENOSINE 'R.PARTHASARATHY,J.M.OHRT,G.B.CHHEDA 1977, BIOCHEMISTRY, 16, 4999' selzis all_ribose_gamma 1 4.10 0.001-0.005A 3-(8-XANTHOSYL)XANTHINE 'XINHUA JI,P.SUBRAMANIAN,D.VAN DER HELM,G.DRYHURST 1990, J.ORG.CHEM., 55, 1291' selzis all_ribose_gamma 2 4.10 0.001-0.005A 3-(8-XANTHOSYL)XANTHINE 'XINHUA JI,P.SUBRAMANIAN,D.VAN DER HELM,G.DRYHURST 1990, J.ORG.CHEM., 55, 1291' uridmp10 all_ribose_gamma 1 5.10 0.006-0.010A ;URIDINE-3'-MONOPHOSPHATE MONOHYDRATE ; 'T.SRIKRISHNAN,S.M.FRIDEY,R.PARTHASARATHY 1979, J.AM.CHEM.SOC., 101, 3739' vuymad all_ribose_gamma 1 2.90 0.001-0.005A 'CYTIDINIUM DIHYDROGENPHOSPHATE' 'M.JASKOLSKI 1989, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 45, 85' yidkif all_ribose_gamma 1 2.97 0.001-0.005A 'BIS(CYTIDINIUM) SULFATE' 'M.GILSKI,M.JASKOLSKI 1993, POL.J.CHEM., 67, 1841' yidkif all_ribose_gamma 2 2.97 0.001-0.005A 'BIS(CYTIDINIUM) SULFATE' 'M.GILSKI,M.JASKOLSKI 1993, POL.J.CHEM., 67, 1841' zaytic all_ribose_gamma 1 3.45 0.001-0.005A '3-METHYLURIDINE (ABSOLUTE CONFIGURATION BY REFINEMENT OF THE FLACK PARAMETER)' ;B.L.PARTRIDGE,C.E.PRITCHARD 1995, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 51, 1929 ; zexwee all_ribose_gamma 1 3.66 0.006-0.010A ;2-CHLORO-N-(1-PHENYL-2(R)-PROPYL)-9-BETA-D-RIBOFURANOSYL-9H-PURIN-6-AMINE (ACTIVATING AGENT OF ADENOSINE A2 RECEPTOR) N-(1-PHENYL-2(R)-PROPYL)-2-CHLORO-ADENOSINE ; 'A.K.DAS,V.BERTOLASI 1995, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 51, 2408' admpot10 all_ribose_gamma 1 2.90 0.001-0.005A ;ADENOSINE-5'-METHYLPHOSPHONATE HEMIHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1724' admpot10 all_ribose_gamma 2 2.90 0.001-0.005A ;ADENOSINE-5'-METHYLPHOSPHONATE HEMIHYDRATE ; 'C.L.BARNES,S.W.HAWKINSON 1979, ACTA CRYSTALLOGR.,SECT.B, 35, 1724' adypur10 all_ribose_gamma 1 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 all_ribose_gamma 2 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 all_ribose_gamma 3 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; adypur10 all_ribose_gamma 4 5.70 0.006-0.010A ;SODIUM ADENYLYL-(3'-5')-URIDINE DINUCLEOTIDE HEXAHYDRATE ; ;N.C.SEEMAN,J.M.ROSENBERG,F.L.SUDDATH,J.J.P.KIM,A.RICH 1976, J.MOL.BIOL., 104, 109 ; apapad10 all_ribose_gamma 1 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' apapad10 all_ribose_gamma 2 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' apapad10 all_ribose_gamma 3 6.80 0.001-0.005A ;ADENYLYL-(3',5')-ADENYLYL-(3',5')-ADENOSINE TRINUCLEOTIDE HEXAHYDRATE (FORM I) ; 'D.SUCK,P.C.MANOR,W.SAENGER 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 1727' beurid10 all_ribose_gamma 1 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; beurid10 all_ribose_gamma 2 3.30 0.001-0.005A URIDINE ;E.A.GREEN,R.D.ROSENSTEIN,R.SHIONO,D.J.ABRAHAM,B.L.TRUS,R.E.MARSH 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 102 ; cytidi01 all_ribose_gamma 1 2.87 0.001-0.005A '4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE BETA-CYTIDINE' 'D.L.WARD 1993, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 49, 1789' cytidi02 all_ribose_gamma 1 5.40 0.001-0.005A 'BETA-CYTIDINE (AT 123 DEG.K, HIGH RESOLUTION REFINEMENT.)' 'LIRONG CHEN,B.M.CRAVEN 1995, ACTA CRYSTALLOGR.,SECT.B (STR.SCI.), 51, 1081' cytidn all_ribose_gamma 1 2.60 0.006-0.010A 'CYTIDINIUM NITRATE' ;J.J.GUY,L.R.NASSIMBENI,G.M.SHELDRICK,R.TAYLOR 1976, ACTA CRYSTALLOGR.,SECT.B, 32, 2909 ; guanph01 all_ribose_gamma 1 3.00 0.001-0.005A ;GUANOSINE-5'-MONOPHOSPHATE TRIHYDRATE (REDETERMINATION OF MURAYAMA ET AL,ACTA CRYST.,B25,2236,1969) ; 'J.EMERSON,M.SUNDARALINGAM 1980, ACTA CRYSTALLOGR.,SECT.B, 36, 1510' hifkem all_ribose_gamma 1 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; hifkem all_ribose_gamma 2 3.60 0.006-0.010A ;TETRASODIUM P,P''-BIS(5'-ADENOSYL)TETRAPHOSPHATE DODECAHYDRATE ; ;D.WATANABE,M.ISHIKAWA,M.YAMASAKI,M.OZAKI,T.KATAYAMA,H.NAKAJIMA 1996, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 52, 338 ; jucjas all_ribose_gamma 1 6.53 0.006-0.010A '5-CARBOXYMETHYLAMINOMETHYLURIDINE MONOHYDRATE' 'Z.GALDECKI,B.LUCIAK,A.MALKIEWICZ,B.NAWROT 1991, MONATSH.CHEM., 122, 487' meurid all_ribose_gamma 1 7.50 0.006-0.010A '5-METHYLURIDINE HEMIHYDRATE' 'D.J.HUNT,E.SUBRAMANIAN 1969, ACTA CRYSTALLOGR.,SECT.B, 25, 2144' mxurid01 all_ribose_gamma 1 3.10 0.001-0.005A 5-METHOXYURIDINE 'G.I.BIRNBAUM,W.J.P.BLONSKI,F.E.HRUSKA 1983, CAN.J.CHEM., 61, 2299' pucglr10 all_ribose_gamma 1 4.60 0.006-0.010A N-6--(N-GLYCYLCARBONYL)ADENOSINE 'R.PARTHASARATHY,J.M.OHRT,G.B.CHHEDA 1977, BIOCHEMISTRY, 16, 4999' taljar all_ribose_gamma 1 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; taljar all_ribose_gamma 2 3.60 0.001-0.005A '4-AMINO-5-METHYL-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE 5-METHYLCYTIDINE' ;N.PADMAJA,S.RAMAKUMAR,M.A.VISWAMITRA 1991, ACTA CRYSTALLOGR.,SECT.C (CR.STR.COMM.), 47, 1445 ; uroame all_ribose_gamma 1 4.00 0.006-0.010A 'URIDINE-5-OXYACETIC ACID METHYL ESTER MONOHYDRATE' 'K.MORIKAWA,K.TORII,Y.IITAKA,M.TSUBOI 1975, ACTA CRYSTALLOGR.,SECT.B, 31, 1004' adypur10 ribose_C3endo_pyrimidine 1 5.70 0.006-0.010A . . adypur10 ribose_C3endo_pyrimidine 2 5.70 0.006-0.010A . . beurid10 ribose_C3endo_pyrimidine 1 3.30 0.001-0.005A . . beurid10 ribose_C3endo_pyrimidine 2 3.30 0.001-0.005A . . cupyuh ribose_C3endo_pyrimidine 1 3.40 0.001-0.005A . . cytidi01 ribose_C3endo_pyrimidine 1 2.87 0.001-0.005A . . cytidi02 ribose_C3endo_pyrimidine 1 5.40 0.001-0.005A . . jucjas ribose_C3endo_pyrimidine 1 6.53 0.006-0.010A . . meurid ribose_C3endo_pyrimidine 1 7.50 0.006-0.010A . . mxurid01 ribose_C3endo_pyrimidine 1 3.10 0.001-0.005A . . taljar ribose_C3endo_pyrimidine 1 3.60 0.001-0.005A . . taljar ribose_C3endo_pyrimidine 2 3.60 0.001-0.005A . . uroame ribose_C3endo_pyrimidine 1 4.00 0.006-0.010A . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C3endo_pyrimidine_anti . . . . . . C2endo_pyrimidine_syn . . . . . . C2endo_pyrimidine_syn . . . . . #