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Bulges
NDBID: UDM010 Full Atlas Entry for UDM010
More Examples of Bulges
Introduction to Nucleic Acids

UDM010 Features
B-DNA double helix, bulges, flipped-out base

Compound name
5'-d(CpGpCpApGpApApTpTpCpGpCpG)-3'

Sequence in asymmetric unit
  • Chain A: C G C A G A A T T C G C G
  • Chain B: C G C A G A A T T C G C G


    • Citation
    L. Joshua-Tor, F. Frolow, E. Appella, H. Hope, D. Rabinovich, J.L. Sussman
    The Three-Dimensional Structures of
    Bulge -Containing DNA FragmentsJ. Mol. Biol., 225, pp. 397-431, 1992.


    Other Examples of Flipped out Bases
       
    UDM010 L. Joshua-Tor et al.
    5'-d(CpGpCpApGpApApTpTpCpGpCpG)-3'
    UHK045 S. Portmann et al.
    5'-r(GpCpGp)-d(ApTpApTpAp)-r(CpGpC)-3', hexagonal
    UHK046 S. Portmann et al.
    5'-r(GpCpGp)-d(ApTpApTpAp)-r(CpGpC)-3', orthorhombic

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