<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8 
         </numbering-table>
         <seq-data>
            gucacaug
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>g</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.763 -7.974 6.572</coordinates>
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            </base>
            <base>
               <position>2</position>
               <base-type>u</base-type>
               <atom serial="23">
                  <atom-type> P  </atom-type>
                     <coordinates>3.348 -7.712 8.113</coordinates>
               </atom>
               <atom serial="31">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.177 -3.149 10.941</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>c</base-type>
               <atom serial="45">
                  <atom-type> P  </atom-type>
                     <coordinates>3.574 -2.898 12.425</coordinates>
               </atom>
               <atom serial="53">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.556 1.954 13.858</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>a</base-type>
               <atom serial="66">
                  <atom-type> P  </atom-type>
                     <coordinates>0.533 2.308 15.070</coordinates>
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               <atom serial="74">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.933 6.666 14.666</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>c</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-4.139 7.007 15.703</coordinates>
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               <atom serial="97">
                  <atom-type> O3'</atom-type>
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            <base>
               <position>6</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="118">
                  <atom-type> O3'</atom-type>
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               <position>7</position>
               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-16.733 7.877 12.602</coordinates>
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               <atom serial="141">
                  <atom-type> O3'</atom-type>
                     <coordinates>-20.304 4.438 9.789</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>g</base-type>
               <atom serial="155">
                  <atom-type> P  </atom-type>
                     <coordinates>-21.741 3.914 10.325</coordinates>
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               <atom serial="163">
                  <atom-type> O3'</atom-type>
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            <str-annotation>
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                  <base-id><position>2</position></base-id>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 157.143</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 235.714</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 314.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 392.857</coordinates>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 471.429</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            9   10 
           11   12   13   14   15   16 
         </numbering-table>
         <seq-data>
            CA UGUGAC
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="185">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.547 -10.515 9.642</coordinates>
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            </base>
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               <position>2</position>
               <base-type>A</base-type>
               <atom serial="200">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.198 -9.971 8.167</coordinates>
               </atom>
               <atom serial="208">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.687 -8.514 4.630</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="224">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.046 -7.673 3.410</coordinates>
               </atom>
               <atom serial="232">
                  <atom-type> O3'</atom-type>
                     <coordinates>-14.484 -3.276 1.367</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="246">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.393 -2.380 0.574</coordinates>
               </atom>
               <atom serial="254">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.227 2.675 0.105</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="271">
                  <atom-type> P  </atom-type>
                     <coordinates>-11.851 3.290 -0.473</coordinates>
               </atom>
               <atom serial="279">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.499 7.516 0.713</coordinates>
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            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="293">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.975 7.623 0.185</coordinates>
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               <atom serial="301">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.135 10.232 2.223</coordinates>
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            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="318">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.702 9.977 1.528</coordinates>
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               <atom serial="326">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="350">
                  <atom-type> O3'</atom-type>
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            <str-annotation>
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            <secondary-structure-display comment="x,y coodinates">
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      </structure>
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   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
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</rnaml>
