<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4    5    6 
         </numbering-table>
         <seq-data>
            gaactc
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type>GPN</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type>APN</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type>APN</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>CPN</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type>TPN</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type>CPN</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>g</base-type>
            </base>
            <base>
               <position>2</position>
               <base-type>a</base-type>
            </base>
            <base>
               <position>3</position>
               <base-type>a</base-type>
            </base>
            <base>
               <position>4</position>
               <base-type>c</base-type>
            </base>
            <base>
               <position>5</position>
               <base-type>t</base-type>
            </base>
            <base>
               <position>6</position>
               <base-type>c</base-type>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>1</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>2</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>3</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>4</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>5</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <base-conformation>
                  <base-id><position>6</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 110.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 220.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 330.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 440.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            7    8    9   10 
           11   12 
         </numbering-table>
         <seq-data>
            GAGU UC
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="188">
                  <atom-type> P  </atom-type>
                     <coordinates>8.386 -6.698 -2.723</coordinates>
               </atom>
               <atom serial="196">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.781 -10.143 -3.945</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="214">
                  <atom-type> P  </atom-type>
                     <coordinates>3.547 -9.176 -4.361</coordinates>
               </atom>
               <atom serial="222">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.419 -10.373 -3.287</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="238">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.741 -9.639 -4.694</coordinates>
               </atom>
               <atom serial="246">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.056 -6.441 -3.813</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="263">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.270 -5.220 -4.858</coordinates>
               </atom>
               <atom serial="271">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.625 -0.335 -3.566</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="285">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.369 0.879 -4.605</coordinates>
               </atom>
               <atom serial="293">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.173 5.845 -3.447</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="307">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.059 6.655 -4.842</coordinates>
               </atom>
               <atom serial="315">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.599 11.207 -5.316</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>264.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>264.000 440.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>264.000 330.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>264.000 220.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>264.000 110.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>264.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <length>6</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
