<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>12</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="12" comment="sequence number in pdb file">
            2    3    4    5    6    7    8    9   10   11 
           12   13 
         </numbering-table>
         <seq-data>
            GGUAAUAAGC UC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.018 -9.827 -1.551</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.593 -9.829 -1.905</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.600 -12.531 -1.085</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="49">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.674 -11.785 -2.032</coordinates>
               </atom>
               <atom serial="57">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.832 -9.392 0.713</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="71">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.865 -8.241 0.257</coordinates>
               </atom>
               <atom serial="79">
                  <atom-type> O3'</atom-type>
                     <coordinates>-14.924 -3.036 2.590</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="95">
                  <atom-type> P  </atom-type>
                     <coordinates>-15.555 -1.641 2.080</coordinates>
               </atom>
               <atom serial="103">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.614 3.530 3.932</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>U</base-type>
               <atom serial="119">
                  <atom-type> P  </atom-type>
                     <coordinates>-14.617 4.627 4.558</coordinates>
               </atom>
               <atom serial="127">
                  <atom-type> O3'</atom-type>
                     <coordinates>-17.565 7.921 0.054</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="141">
                  <atom-type> P  </atom-type>
                     <coordinates>-18.234 9.238 0.698</coordinates>
               </atom>
               <atom serial="149">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.877 13.312 2.303</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>A</base-type>
               <atom serial="165">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.268 14.629 1.600</coordinates>
               </atom>
               <atom serial="173">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.003 15.568 4.269</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="189">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.406 15.844 4.292</coordinates>
               </atom>
               <atom serial="197">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.271 15.467 6.609</coordinates>
               </atom>
            </base>
            <base>
               <position>10</position>
               <base-type>C</base-type>
               <atom serial="214">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.967 15.476 5.643</coordinates>
               </atom>
               <atom serial="222">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.729 14.587 7.583</coordinates>
               </atom>
            </base>
            <base>
               <position>11</position>
               <base-type>U</base-type>
               <atom serial="236">
                  <atom-type> P  </atom-type>
                     <coordinates>3.868 14.871 6.468</coordinates>
               </atom>
               <atom serial="244">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.941 12.887 4.607</coordinates>
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            </base>
            <base>
               <position>12</position>
               <base-type>C</base-type>
               <atom serial="258">
                  <atom-type> P  </atom-type>
                     <coordinates>8.314 13.888 3.395</coordinates>
               </atom>
               <atom serial="266">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.945 12.259 -1.583</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>4</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>286.394 196.423</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>229.115 166.946</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>171.836 137.469</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>137.469 119.783</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>103.102 102.096</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>68.734 84.410</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>34.367 66.724</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 49.037</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>209.791 356.744</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>209.791 421.163</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>11</position></base-id>
                  <coordinates>209.791 485.581</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>12</position></base-id>
                  <coordinates>209.791 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
           18   19   20   21   22   23   24 
         </numbering-table>
         <seq-data>
            GAGUACC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="286">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.303 5.458 -5.299</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="304">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.968 4.287 -4.240</coordinates>
               </atom>
               <atom serial="312">
                  <atom-type> O3'</atom-type>
                     <coordinates>-0.611 0.997 -3.150</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="328">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.939 0.302 -1.717</coordinates>
               </atom>
               <atom serial="336">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.303 -0.309 2.540</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="353">
                  <atom-type> P  </atom-type>
                     <coordinates>0.130 -1.209 3.184</coordinates>
               </atom>
               <atom serial="361">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.337 0.100 7.750</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="375">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.764 -0.500 8.210</coordinates>
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               <atom serial="383">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.345 -0.349 11.451</coordinates>
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               <position>6</position>
               <base-type>C</base-type>
               <atom serial="399">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.005 -1.733 12.215</coordinates>
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               <atom serial="407">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="421">
                  <atom-type> P  </atom-type>
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               <atom serial="429">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.019 -10.465 13.916</coordinates>
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            <str-annotation>
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            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>55.186 550.000</coordinates>
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                  <base-id><position>2</position></base-id>
                  <coordinates>55.186 485.581</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>55.186 421.163</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>55.186 356.744</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
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               <ss-base-coord>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>357.139 58.954</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>3</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
