<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8 
         </numbering-table>
         <seq-data>
            GCAGUGGC
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.495 -12.154 0.368</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>-13.748 -10.599 0.668</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.045 -7.925 4.946</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>A</base-type>
               <atom serial="46">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.455 -6.427 5.032</coordinates>
               </atom>
               <atom serial="54">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.392 -5.875 7.555</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="70">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.590 -4.514 7.785</coordinates>
               </atom>
               <atom serial="78">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.213 -4.783 7.253</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="95">
                  <atom-type> P  </atom-type>
                     <coordinates>2.379 -3.720 7.525</coordinates>
               </atom>
               <atom serial="103">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.542 -2.243 4.656</coordinates>
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            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="117">
                  <atom-type> P  </atom-type>
                     <coordinates>7.252 -0.885 5.104</coordinates>
               </atom>
               <atom serial="125">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.522 3.271 2.639</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="142">
                  <atom-type> P  </atom-type>
                     <coordinates>8.604 4.655 3.409</coordinates>
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               <atom serial="150">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.960 9.911 2.086</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="167">
                  <atom-type> P  </atom-type>
                     <coordinates>9.317 9.950 2.928</coordinates>
               </atom>
               <atom serial="175">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.217 6.627 6.143</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>8</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>212.903 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>212.903 53.226</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
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               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>212.903 230.645</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>212.903 319.355</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>212.903 408.065</coordinates>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>212.903 496.774</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>212.903 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
          101  102 
          103  104  105  106  107  108 
         </numbering-table>
         <seq-data>
            GC CAcugc
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="195">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.341 12.457 4.960</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="213">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.794 11.210 4.081</coordinates>
               </atom>
               <atom serial="221">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.400 10.532 -1.217</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="235">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.546 9.101 -1.936</coordinates>
               </atom>
               <atom serial="243">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.693 7.177 -5.857</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="257">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.834 5.603 -6.113</coordinates>
               </atom>
               <atom serial="265">
                  <atom-type> O3'</atom-type>
                     <coordinates>-0.683 2.704 -8.223</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>c</base-type>
               <atom serial="281">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.217 1.246 -8.604</coordinates>
               </atom>
               <atom serial="289">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.785 -2.676 -7.538</coordinates>
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            </base>
            <base>
               <position>6</position>
               <base-type>u</base-type>
               <atom serial="302">
                  <atom-type> P  </atom-type>
                     <coordinates>2.569 -4.263 -7.516</coordinates>
               </atom>
               <atom serial="310">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.138 -7.556 -4.047</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>g</base-type>
               <atom serial="324">
                  <atom-type> P  </atom-type>
                     <coordinates>3.809 -9.099 -4.289</coordinates>
               </atom>
               <atom serial="332">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.657 -11.535 1.176</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>c</base-type>
               <atom serial="348">
                  <atom-type> P  </atom-type>
                     <coordinates>4.947 -12.250 1.801</coordinates>
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               <atom serial="356">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.669 -17.520 3.479</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>1</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>1</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>8</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
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            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 319.355</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 230.645</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 53.226</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>6</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
