<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            ggagaUGAC
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>g</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.379 -13.623 5.182</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>g</base-type>
               <atom serial="20">
                  <atom-type> P  </atom-type>
                     <coordinates>8.095 -12.709 4.066</coordinates>
               </atom>
               <atom serial="28">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.304 -12.396 -1.328</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>a</base-type>
               <atom serial="42">
                  <atom-type> P  </atom-type>
                     <coordinates>5.776 -11.238 -2.333</coordinates>
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               <atom serial="50">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.493 -9.731 -5.363</coordinates>
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            <base>
               <position>4</position>
               <base-type>g</base-type>
               <atom serial="63">
                  <atom-type> P  </atom-type>
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               <atom serial="71">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.169 -5.908 -7.523</coordinates>
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               <position>5</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-2.469 -4.490 -8.237</coordinates>
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               <atom serial="93">
                  <atom-type> O3'</atom-type>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>G</base-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>A</base-type>
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                  <atom-type> O3'</atom-type>
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               <position>9</position>
               <base-type>C</base-type>
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            </secondary-structure-display>
         </model>
      </structure>
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   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
           10 
           11   12   13   14   15   16   17   18 
         </numbering-table>
         <seq-data>
            g ucaucucc
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type> DG</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type> DC</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>g</base-type>
               <atom serial="196">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.972 6.678 -5.773</coordinates>
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               <position>2</position>
               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>11.957 5.943 -4.339</coordinates>
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               <atom serial="218">
                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="238">
                  <atom-type> O3'</atom-type>
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               <position>4</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>1</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
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                     </base-id>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
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                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
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                  <base-id-3p>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
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                  <base-id-3p>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
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                  <base-id-3p>
                     <base-id>
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                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>8</position>
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                  <base-id-3p>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
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                  <base-id-3p>
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               <helix id="H1">
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                     <base-id>
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                     <base-id>
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                  </base-id-3p>
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