PDB ID: 1EKD


Title:NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Molecular Description:5'-R(GpGpCpGpUpGpCpC)-3'
Nucleic Acid Sequence:
ChainsA,B:G G C G U G C C
Primary Citation:Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.
Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Biochemistry , 39, pp. 8970 - 8982, 2000.
Experimental Information:SOLUTION NMR
Number of Models:1 Model
Sample Details: 2.5 mM RNA oligomer 10 mM phosphate, 80 mM NaCl, 100% D2O

Structure
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Coordinates

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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1EKD

PubMed: 10913310




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