<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>12</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="12" comment="sequence number in pdb file">
           -1    1    2    3    4    5    6    7    8    9 
           10   11 
         </numbering-table>
         <seq-data>
            UUGCCUGGCG GC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>U</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>8.351 -6.712 -2.617</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.386 -6.922 3.303</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="43">
                  <atom-type> P  </atom-type>
                     <coordinates>8.980 -8.026 4.424</coordinates>
               </atom>
               <atom serial="51">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.750 -8.555 9.201</coordinates>
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            <base>
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               <base-type>C</base-type>
               <atom serial="68">
                  <atom-type> P  </atom-type>
                     <coordinates>6.885 -9.923 9.102</coordinates>
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               <atom serial="76">
                  <atom-type> O3'</atom-type>
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               <position>5</position>
               <base-type>C</base-type>
               <atom serial="90">
                  <atom-type> P  </atom-type>
                     <coordinates>2.837 -12.653 11.859</coordinates>
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               <atom serial="98">
                  <atom-type> O3'</atom-type>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="120">
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               <base-type>G</base-type>
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               <base-type>G</base-type>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>0.168 -29.487 -0.510</coordinates>
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                  <atom-type> O3'</atom-type>
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               <base-type>G</base-type>
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               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>2</position></base-id></base-id-3p>
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               <single-strand>
                  <segment>
                     <seg-name>SG2</seg-name>
                     <base-id-5p><base-id><position>12</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>12</position></base-id></base-id-3p>
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               <ss-base-coord>
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         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>13</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="13" comment="sequence number in pdb file">
            8    9   10   11   12   13   14   15 
           16   17   18   19   20 
         </numbering-table>
         <seq-data>
            AACUGCCA GGCAU
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>A</base-type>
               <atom serial="284">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="301">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.592 -27.390 13.172</coordinates>
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               <atom serial="309">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.238 -25.337 15.638</coordinates>
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            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="325">
                  <atom-type> P  </atom-type>
                     <coordinates>3.017 -24.092 14.625</coordinates>
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               <atom serial="333">
                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>6.781 -20.205 12.070</coordinates>
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               <base-type>C</base-type>
               <atom serial="394">
                  <atom-type> P  </atom-type>
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                  <segment>
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                     <base-id-5p><base-id><position>12</position></base-id></base-id-5p>
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   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
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                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
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                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
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                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
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                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>H</edge-3p>
                  <bond-orientation>t</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <length>9</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
