<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCAGGCGUGC 
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.723 12.498 6.738</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.090 11.539 5.498</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.187 12.773 0.481</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>A</base-type>
               <atom serial="46">
                  <atom-type> P  </atom-type>
                     <coordinates>-5.418 11.524 -0.514</coordinates>
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               <atom serial="54">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.458 11.240 -5.088</coordinates>
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            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="70">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.877 9.972 -5.995</coordinates>
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               <atom serial="78">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.805 6.561 -8.035</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="95">
                  <atom-type> P  </atom-type>
                     <coordinates>0.508 5.012 -8.393</coordinates>
               </atom>
               <atom serial="103">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.305 1.230 -8.626</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="120">
                  <atom-type> P  </atom-type>
                     <coordinates>3.819 -0.277 -8.947</coordinates>
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               <atom serial="128">
                  <atom-type> O3'</atom-type>
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               <position>7</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <position>8</position>
               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>4.712 -11.467 -4.193</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>2.257 -14.188 -0.365</coordinates>
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               <position>9</position>
               <base-type>G</base-type>
               <atom serial="189">
                  <atom-type> P  </atom-type>
                     <coordinates>1.156 -15.235 -0.908</coordinates>
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                  <atom-type> O3'</atom-type>
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            <base>
               <position>10</position>
               <base-type>C</base-type>
               <atom serial="214">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.845 -17.975 0.693</coordinates>
               </atom>
               <atom serial="222">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.700 -18.241 -0.510</coordinates>
               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>7</position></base-id>
                  <glycosyl>syn</glycosyl>
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            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
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                  <base-id><position>1</position></base-id>
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                  <base-id><position>2</position></base-id>
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                  <base-id><position>3</position></base-id>
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                  <base-id><position>4</position></base-id>
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                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 244.444</coordinates>
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                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 305.556</coordinates>
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                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCAGGCGUGC 
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.848 -4.407 -6.779</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="260">
                  <atom-type> P  </atom-type>
                     <coordinates>-12.413 -3.495 -5.525</coordinates>
               </atom>
               <atom serial="268">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.813 -5.089 -0.531</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>A</base-type>
               <atom serial="282">
                  <atom-type> P  </atom-type>
                     <coordinates>-12.099 -4.069 0.496</coordinates>
               </atom>
               <atom serial="290">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.836 -6.028 5.026</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="306">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.224 -4.842 5.935</coordinates>
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               <atom serial="314">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.261 -5.132 8.024</coordinates>
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            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="331">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.373 -3.833 8.394</coordinates>
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               <atom serial="339">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.980 -3.935 8.620</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="356">
                  <atom-type> P  </atom-type>
                     <coordinates>2.731 -2.542 8.948</coordinates>
               </atom>
               <atom serial="364">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.326 -1.094 6.983</coordinates>
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            <base>
               <position>7</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
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            <base>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>7</position></base-id>
                  <glycosyl>syn</glycosyl>
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         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>H</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
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                  </base-id-3p>
                  <edge-5p>H</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <length>10</length>
               </helix>
            </str-annotation>
   </interactions>
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