<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCAGGCGUGC 
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>12.556 5.729 -7.164</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>12.199 4.668 -6.008</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>12.405 5.791 -0.887</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>A</base-type>
               <atom serial="46">
                  <atom-type> P  </atom-type>
                     <coordinates>11.811 4.608 0.033</coordinates>
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               <atom serial="54">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.451 5.777 4.704</coordinates>
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            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="70">
                  <atom-type> P  </atom-type>
                     <coordinates>8.737 4.573 5.506</coordinates>
               </atom>
               <atom serial="78">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.320 5.131 8.401</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="95">
                  <atom-type> P  </atom-type>
                     <coordinates>3.537 3.750 8.712</coordinates>
               </atom>
               <atom serial="103">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.836 3.328 8.791</coordinates>
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            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="120">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.431 1.856 9.080</coordinates>
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               <atom serial="128">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.931 0.045 6.830</coordinates>
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               <position>7</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <position>8</position>
               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-8.910 -6.732 4.252</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>-8.583 -10.388 0.331</coordinates>
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            </base>
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               <position>9</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-8.344 -11.923 0.770</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>-5.801 -15.551 -2.031</coordinates>
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            <base>
               <position>10</position>
               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-5.738 -16.941 -1.215</coordinates>
               </atom>
               <atom serial="222">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.868 -20.040 -0.342</coordinates>
               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>4</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
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                  <base-id><position>1</position></base-id>
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                  <base-id><position>2</position></base-id>
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                  <base-id><position>3</position></base-id>
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                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 183.333</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 244.444</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 305.556</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 427.778</coordinates>
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               <ss-base-coord>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCAGGCGUGC 
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.307 -11.638 7.057</coordinates>
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            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="260">
                  <atom-type> P  </atom-type>
                     <coordinates>9.492 -10.488 5.944</coordinates>
               </atom>
               <atom serial="268">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.121 -11.351 0.807</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>A</base-type>
               <atom serial="282">
                  <atom-type> P  </atom-type>
                     <coordinates>9.144 -9.977 -0.038</coordinates>
               </atom>
               <atom serial="290">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.481 -9.542 -4.618</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="306">
                  <atom-type> P  </atom-type>
                     <coordinates>6.212 -8.119 -5.321</coordinates>
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               <atom serial="314">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.459 -6.346 -8.240</coordinates>
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            <base>
               <position>5</position>
               <base-type>G</base-type>
               <atom serial="331">
                  <atom-type> P  </atom-type>
                     <coordinates>1.168 -4.788 -8.544</coordinates>
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               <atom serial="339">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.597 -2.538 -8.116</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="356">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.611 -0.954 -8.433</coordinates>
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               <atom serial="364">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.778 2.532 -6.032</coordinates>
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            </base>
            <base>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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               <position>8</position>
               <base-type>U</base-type>
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            <base>
               <position>9</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-2.949 14.285 -0.843</coordinates>
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               <base-type>C</base-type>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>4</position></base-id>
                  <glycosyl>syn</glycosyl>
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            <secondary-structure-display comment="x,y coodinates">
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      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>H</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>H</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <length>10</length>
               </helix>
            </str-annotation>
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