<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4    5    6 
         </numbering-table>
         <seq-data>
            CaCGuG
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> IG</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> IC</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.929 -1.987 -0.939</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>a</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.731 -2.003 0.659</coordinates>
               </atom>
               <atom serial="25">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.089 -6.307 2.552</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="46">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.228 -5.985 3.879</coordinates>
               </atom>
               <atom serial="54">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.229 -7.412 4.697</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="68">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.548 -6.631 5.938</coordinates>
               </atom>
               <atom serial="76">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.658 -5.447 6.209</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>u</base-type>
               <atom serial="93">
                  <atom-type> P  </atom-type>
                     <coordinates>4.070 -4.503 7.455</coordinates>
               </atom>
               <atom serial="97">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.847 -0.626 7.075</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="115">
                  <atom-type> P  </atom-type>
                     <coordinates>7.962 0.369 8.344</coordinates>
               </atom>
               <atom serial="123">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.332 5.644 8.186</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>264.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>264.000 110.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>264.000 220.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>264.000 330.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>264.000 440.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>264.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>6</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="6" comment="sequence number in pdb file">
            1    2    3    4 
            5    6 
         </numbering-table>
         <seq-data>
            CaCG uG
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type> IG</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> IC</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="146">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.536 10.661 0.950</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>a</base-type>
               <atom serial="161">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.477 10.461 -0.647</coordinates>
               </atom>
               <atom serial="165">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.535 10.082 -2.573</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="186">
                  <atom-type> P  </atom-type>
                     <coordinates>1.648 9.161 -3.894</coordinates>
               </atom>
               <atom serial="194">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.349 5.516 -4.713</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="208">
                  <atom-type> P  </atom-type>
                     <coordinates>4.999 4.537 -5.950</coordinates>
               </atom>
               <atom serial="216">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.515 -0.570 -6.186</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>u</base-type>
               <atom serial="233">
                  <atom-type> P  </atom-type>
                     <coordinates>5.901 -1.389 -7.437</coordinates>
               </atom>
               <atom serial="237">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.325 -6.550 -7.090</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="255">
                  <atom-type> P  </atom-type>
                     <coordinates>3.501 -7.107 -8.365</coordinates>
               </atom>
               <atom serial="263">
                  <atom-type> O3'</atom-type>
                     <coordinates>-0.941 -9.995 -8.186</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 440.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 330.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 220.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 110.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <length>6</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
