<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8 
         </numbering-table>
         <seq-data>
            GAGGUCUC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.310 -9.577 6.801</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>2.117 -9.192 7.822</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.976 -5.578 11.325</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="48">
                  <atom-type> P  </atom-type>
                     <coordinates>0.506 -5.390 11.971</coordinates>
               </atom>
               <atom serial="56">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.571 -1.091 13.633</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="73">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.148 -0.896 13.941</coordinates>
               </atom>
               <atom serial="81">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.626 3.442 14.845</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="98">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.148 3.080 15.231</coordinates>
               </atom>
               <atom serial="106">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.388 4.827 13.524</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="120">
                  <atom-type> P  </atom-type>
                     <coordinates>-12.606 3.867 13.968</coordinates>
               </atom>
               <atom serial="128">
                  <atom-type> O3'</atom-type>
                     <coordinates>-16.713 2.793 11.203</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>U</base-type>
               <atom serial="142">
                  <atom-type> P  </atom-type>
                     <coordinates>-17.583 1.572 11.803</coordinates>
               </atom>
               <atom serial="150">
                  <atom-type> O3'</atom-type>
                     <coordinates>-20.315 -1.840 9.459</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="164">
                  <atom-type> P  </atom-type>
                     <coordinates>-20.879 -3.043 10.383</coordinates>
               </atom>
               <atom serial="172">
                  <atom-type> O3'</atom-type>
                     <coordinates>-22.034 -7.739 9.028</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 78.571</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 157.143</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 235.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 314.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 392.857</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            9   10 
           11   12   13   14   15   16 
         </numbering-table>
         <seq-data>
            GA GGUCUC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="192">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.163 -14.895 6.412</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="210">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.651 -13.711 5.440</coordinates>
               </atom>
               <atom serial="218">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.303 -11.254 1.944</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="234">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.517 -9.997 1.302</coordinates>
               </atom>
               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.516 -5.670 -0.368</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="259">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.656 -4.334 -0.675</coordinates>
               </atom>
               <atom serial="267">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.377 0.352 -1.581</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="284">
                  <atom-type> P  </atom-type>
                     <coordinates>-11.117 1.276 -1.973</coordinates>
               </atom>
               <atom serial="292">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.675 5.623 -0.273</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="306">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.157 5.925 -0.730</coordinates>
               </atom>
               <atom serial="314">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.649 8.340 1.987</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>U</base-type>
               <atom serial="328">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.154 8.190 1.394</coordinates>
               </atom>
               <atom serial="336">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.202 8.107 3.785</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="350">
                  <atom-type> P  </atom-type>
                     <coordinates>2.481 7.748 2.860</coordinates>
               </atom>
               <atom serial="358">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.750 5.512 4.149</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>188.571 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>188.571 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>188.571 392.857</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>188.571 314.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>188.571 235.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>188.571 157.143</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>188.571 78.571</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>188.571 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
