PDB ID: 1K29


Title:SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING M1G OPPOSITE A 2 BASE PAIR DELETION
Molecular Description:5'-D(ApTpCpGpCp(M1G)pCpGpGpCpApTpG)-3'
Nucleic Acid Sequence:
ChainA:(DA) (DT) (DC) (DG) (DC) (M1G) (DC) (DG) (DG) (DC) (DA) (DT) (DG)
ChainB:(DC) (DA) (DT) (DG) (DC) (DC) (DG) (DC) (DG) (DA) (DT)
Primary Citation:Schnetz-Boutaud, N.C., Saleh, S., Marnett, L.J., Stone, M.P.
The exocyclic 1,N2-deoxyguanosine pyrimidopurinone M1G is a chemically stable DNA adduct when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene.
Biochemistry , 40, pp. 15638 - 15649, 2001.
Experimental Information:SOLUTION NMR
Number of Models:1 Model
Sample Details: 2mM DNA, 10mM phosphate buffer, 0.1M NaCl, 50 uM EDTA , pH 7 99.96% D2o

Structure
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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1K29

PubMed: 11747439




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