PDB ID: 1LAQ


Title:SOLUTION STRUCTURE OF THE B-DNA DUPLEX CGCGGTXTCCGCG (X=PDG) CONTAINING THE 1,N2-PROPANODEOXYGUANOSINE ADDUCT WITH THE DEOXYRIBOSE AT C20 OPPOSITE PDG IN THE C2' ENDO CONFORMATION.
Molecular Description:5'-D(CpGpCpGpGpTp(P)pTpCpCpGpCpG)-3'
Nucleic Acid Sequence:
ChainA:Click here for sequence.
ChainB:Click here for sequence.
Primary Citation:Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.
Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2.
Chem.Res.Toxicol. , 15, pp. 127 - 139, 2002.
Experimental Information:NMR
Number of Models:1 Model
Sample Details: 1.8 mM DNA strand, 10 mM sodium phosphate, 100 mM NaCl, 50 uM EDTA D2O

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Coordinates

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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1LAQ

PubMed: 11849038




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