<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            GGCaAGCCU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>P5P</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.891 -7.559 5.924</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>10.003 -8.759 6.546</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.548 -8.382 11.178</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="49">
                  <atom-type> P  </atom-type>
                     <coordinates>6.732 -9.738 11.517</coordinates>
               </atom>
               <atom serial="57">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.120 -9.698 14.164</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>a</base-type>
               <atom serial="84">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.411 -12.610 13.588</coordinates>
               </atom>
               <atom serial="89">
                  <atom-type> P  </atom-type>
                     <coordinates>1.550 -11.199 14.320</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="95">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.059 -14.071 13.343</coordinates>
               </atom>
               <atom serial="103">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.258 -14.720 13.656</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="119">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.922 -16.224 14.146</coordinates>
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               <atom serial="127">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.391 -19.947 10.450</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="144">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.939 -21.464 10.787</coordinates>
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               <atom serial="152">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.204 -24.845 7.206</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="166">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.751 -26.243 7.886</coordinates>
               </atom>
               <atom serial="174">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.836 -29.234 5.934</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>U</base-type>
               <atom serial="188">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.536 -30.482 6.919</coordinates>
               </atom>
               <atom serial="196">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.195 -32.141 8.430</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 107.317</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 509.756</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1 
            2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            G GCaAGCCU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>P5P</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="216">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.094 -21.618 8.759</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="234">
                  <atom-type> P  </atom-type>
                     <coordinates>8.518 -20.252 8.113</coordinates>
               </atom>
               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.031 -20.136 3.485</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="259">
                  <atom-type> P  </atom-type>
                     <coordinates>5.562 -18.632 3.118</coordinates>
               </atom>
               <atom serial="267">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.074 -17.573 0.505</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>a</base-type>
               <atom serial="294">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.554 -13.371 1.092</coordinates>
               </atom>
               <atom serial="299">
                  <atom-type> P  </atom-type>
                     <coordinates>0.894 -15.978 0.342</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="305">
                  <atom-type> P  </atom-type>
                     <coordinates>-3.812 -11.791 1.333</coordinates>
               </atom>
               <atom serial="313">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.692 -9.856 1.066</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="329">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.011 -8.475 0.579</coordinates>
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               <atom serial="337">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.424 -4.516 4.232</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="354">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.593 -3.165 3.918</coordinates>
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               <atom serial="362">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.168 -0.356 7.602</coordinates>
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            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="376">
                  <atom-type> P  </atom-type>
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               <atom serial="384">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.120 2.827 8.948</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>0.709 3.981 7.981</coordinates>
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               <atom serial="406">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.742 4.469 6.527</coordinates>
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            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>160.976 509.756</coordinates>
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               <ss-base-coord>
                  <base-id><position>2</position></base-id>
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                  <base-id><position>4</position></base-id>
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                  <base-id><position>9</position></base-id>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>S</edge-5p>
                  <edge-3p>H</edge-3p>
                  <bond-orientation>t</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>H</edge-5p>
                  <edge-3p>S</edge-3p>
                  <bond-orientation>t</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
