<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            GGCAaGCCU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type>P5P</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>12.801 -0.016 -0.144</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="24">
                  <atom-type> P  </atom-type>
                     <coordinates>11.530 -0.418 0.776</coordinates>
               </atom>
               <atom serial="32">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.057 2.454 4.985</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="49">
                  <atom-type> P  </atom-type>
                     <coordinates>8.780 1.803 5.730</coordinates>
               </atom>
               <atom serial="57">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.987 4.022 8.028</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="71">
                  <atom-type> P  </atom-type>
                     <coordinates>4.150 2.771 8.613</coordinates>
               </atom>
               <atom serial="79">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.165 3.021 8.996</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>a</base-type>
               <atom serial="108">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.239 1.491 7.987</coordinates>
               </atom>
               <atom serial="113">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.090 1.695 9.014</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="119">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.665 -0.058 7.793</coordinates>
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               <atom serial="127">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.956 -1.901 4.251</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="144">
                  <atom-type> P  </atom-type>
                     <coordinates>-11.124 -3.460 4.639</coordinates>
               </atom>
               <atom serial="152">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.409 -7.257 1.132</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="166">
                  <atom-type> P  </atom-type>
                     <coordinates>-11.335 -8.676 1.904</coordinates>
               </atom>
               <atom serial="174">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.005 -12.950 -0.072</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>U</base-type>
               <atom serial="188">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.972 -14.092 1.073</coordinates>
               </atom>
               <atom serial="196">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.893 -17.057 2.394</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 107.317</coordinates>
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               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1 
            2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            G GCAaGCCU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type>P5P</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="216">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.760 -10.557 -0.592</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="234">
                  <atom-type> P  </atom-type>
                     <coordinates>5.529 -9.253 -1.520</coordinates>
               </atom>
               <atom serial="242">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.158 -9.112 -5.496</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="259">
                  <atom-type> P  </atom-type>
                     <coordinates>2.170 -7.671 -6.221</coordinates>
               </atom>
               <atom serial="267">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.526 -5.143 -8.320</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>A</base-type>
               <atom serial="281">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.921 -3.758 -8.885</coordinates>
               </atom>
               <atom serial="289">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.783 0.568 -9.577</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>a</base-type>
               <atom serial="318">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.178 6.676 -7.897</coordinates>
               </atom>
               <atom serial="323">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.861 1.883 -9.753</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="329">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.940 7.704 -7.719</coordinates>
               </atom>
               <atom serial="337">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.606 11.298 -3.940</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="354">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.291 12.179 -4.263</coordinates>
               </atom>
               <atom serial="362">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.038 13.887 -0.780</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="376">
                  <atom-type> P  </atom-type>
                     <coordinates>3.330 14.493 -1.536</coordinates>
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               <atom serial="384">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.184 14.287 0.389</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>9.174 14.901 -0.731</coordinates>
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               <atom serial="406">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.656 12.890 -2.355</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>160.976 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
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                  <base-id><position>4</position></base-id>
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                  <base-id><position>7</position></base-id>
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               <ss-base-coord>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>160.976 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
