NDB ID: AD0001


Title:STRUCTURE OF A DNA IN LOW SALT CONDITIONS D(GACCGCGGTC)
Molecular Description:5'-D(GpApCpCpGpCpGpGpTpC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DG) (DA) (DC) (DC) (DG) (DC) (DG) (DG) (DT) (DC)
Primary Citation:Finley, J.B., Luo, M.
X-ray crystal structures of half the human papilloma virus E2 binding site: d(GACCGCGGTC).
Nucleic Acids Res. , 26, pp. 5719 - 5727, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 38.444b = 38.444c = 80.175(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, Spermine HCl, Na Cacodylate
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 21.9 for 1779 reflections in the resolution range 5.000 to 2.200 Ångstroms with Fobs > 3.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 401D

PubMed: 9838004




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