NDB ID: AD0006


Title:A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES
Molecular Description:5'-D(ApCpCpGpGpCpCpGpGpT)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DA) (DC) (DC) (DG) (DG) (DC) (DC) (DG) (DG) (DT)
Primary Citation:Robinson, H., Gao, Y.G., Sanishvili, R., Joachimiak, A., Wang, A.H.
Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res. , 28, pp. 1760 - 1766, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 38.502b = 38.502c = 77.631(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:CACODYLATE, SPERMINE, MgCl2, MPD
Reservoir:MPD
Refinement:The structure was refined using the SHELXL-97 program. The R value is 22.7 for 4874 reflections in the resolution range 20.0 to 1.6 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DNZ

PubMed: 10734195




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