NDB ID: AD0007


Title:A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE
Molecular Description:5'-D(GpCpGpTpAp(T23)pApCpGpC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DG) (DC) (DG) (DT) (DA) (T23) (DA) (DC) (DG) (DC)
Primary Citation:Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.
X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution.
Biopolymers , 48, pp. 234 - 252, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 24.627b = 42.717c = 46.906(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:SPERMINE, SODIUM CACODYLATE BUFFER, MgCl2, NaCl, KCl
Reservoir:MgCl2, NaCl, KCl
Refinement:The structure was refined using the SHELXL-97 program. The R value is 11.5 for 47403 reflections in the resolution range 20 to 0.83 Ångstroms with Fobs > 0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DPL

PubMed: 10699842




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