NDB ID: AD0009


Title:CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
Molecular Description:5'-D(GpGpCpGp(5CM)pC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D,E,F:(DG) (DG) (DC) (DG) (5CM) (DC)
Primary Citation:Vargason, J.M., Eichman, B.F., Ho, P.S.
The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol. , 7, pp. 758 - 761, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21
Cell Constants:
a = 37.060b = 46.727c = 110.689(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 0.9 program. The R value is 20.5 for 5740 reflections in the resolution range 8.0 to 2.0 Ångstroms with I > 0.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)123

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1F6E

PubMed: 10966645




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