NDB ID: AD0053


Title:12MER-SPD
Molecular Description:5'-D(ApGpGpGpGpCpGpGpGpGpCpT)-3'
Structural Features:A DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainA:(DA) (DG) (DG) (DG) (DG) (DC) (DG) (DG) (DG) (DG) (DC) (DT)
ChainB:(DT) (DA) (DG) (DC) (DC) (DC) (DC) (DG) (DC) (DC) (DC) (DC)
Primary Citation:Dohm, J.A., Hsu, M.H., Hwu, J.R., Huang, R.C., Moudrianakis, E.N., Lattman, E.E., Gittis, A.G.
Influence of Ions, Hydration, and the Transcriptional Inhibitor P4N on the Conformations of the Sp1 Binding Site.
J.Mol.Biol. , 349, pp. 731 - 744, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 33.541b = 39.687c = 42.166(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 21.7 for 3394 reflections in the resolution range 15.0 to 2.1 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1ZJE

PubMed: 15896803




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