NDB ID: ADH010


Title:SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C)
Molecular Description:5'-D(GpGpTpApTpApCpC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DG) (DG) (DT) (DA) (DT) (DA) (DC) (DC)
Primary Citation:Shakked, Z., Rabinovich, D., Kennard, O., Cruse, W.B., Salisbury, S.A., Viswamitra, M.A.
Sequence-dependent conformation of an A-DNA double helix: The crystal structure of the octamer d(G-G-T-A-T-A-C-C)
J.Mol.Biol. , 166, pp. 183 - 201, 1983.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61
Cell Constants:
a = 44.970b = 44.970c = 41.756(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, Spermine HCl, BaCl2, Na Cacodylate
Reservoir:WATER, MPD
Refinement:The structure was refined using the CORELS program. The R value is 19.8 for 3251 reflections in the resolution range 8.000 to 1.800 Ångstroms with Fobs > 1.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1VJ4

PubMed: 6854642




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