NDB ID: ADH014


Title:BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC)
Molecular Description:5'-D(GpTpGpTpApCpApC)-3'
SPERMINE
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DG) (DT) (DG) (DT) (DA) (DC) (DA) (DC)
Primary Citation:Jain, S., Zon, G., Sundaralingam, M.
Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC).
Biochemistry , 28, pp. 2360 - 2364, 1989.
Experimental Information:X-RAY DIFFRACTION
Space Group: 43   21   2
Cell Constants:
a = 42.430b = 42.430c = 24.750(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, SPERMINE
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 11.5 for 1214 reflections in the resolution range 5.000 to 2.000 Ångstroms .

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DNS

PubMed: 2730868




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