NDB ID: ADH054


Title:MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
Molecular Description:5'-D(GpApApGpCpTpTpC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B, C, D: (DG) (DA) (DA) (DG) (DC) (DT) (DT) (DC)
Primary Citation:Kamitori, S., Takusagawa, F.
Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of d(GAAGCTTC)2-Actinomycin D Complexes and Its Host DNA
J.Am.Chem.Soc. , 116, pp. 4154 - 4165, 1994.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 70.540b = 70.540c = 53.300(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, Na Cacodylate, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 21.2 for 1035 reflections in the resolution range 10.000 to 3.000 Ångstroms with Fobs > 1.500 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 172D

PubMed: -1




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