NDB ID: ADJB61
Title:
CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR
Molecular Description:
5'-D(CpCpIpGpGpCpCp(5CM)pGpG)-3'
Structural Features:
A DOUBLE HELIX
Nucleic Acid Sequence:
Chain
s
A,B:
(DC) (DC) (DI) (DG) (DG) (DC) (DC) (5CM) (DG) (DG)
Primary Citation:
Ramakrishnan, B., Sundaralingam, M.
Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair.
Biophys.J.
,
69
, pp. 553 - 558, 1995.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
2
1
2
1
2
1
Cell Constants:
a = 25.020
b = 44.950
c = 47.620
(Ångstroms)
= 90.00
= 90.00
= 90.00
(degrees)
Refinement:
The structure was refined using the X-PLOR program. The R value is 16.3 for 5119 reflections in the resolution range 8.000 to 1.600 Ångstroms with Fobs > 3.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
213D
PubMed:
8527669
ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey