NDB ID: ADL046


Title:CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG)
Molecular Description:5'-D(GpCpGpTpApCpGpTpApCpGpC)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DG) (DC) (DG) (DT) (DA) (DC) (DG) (DT) (DA) (DC) (DG) (DC)
Primary Citation:Bingman, C., Jain, S., Zon, G., Sundaralingam, M.
Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG).
Nucleic Acids Res. , 20, pp. 6637 - 6647, 1992.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61   2
Cell Constants:
a = 46.200b = 46.200c = 71.500(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, SPERMINE, [CO(NH3)6]3+, Na Cacodylate
Reservoir:WATER, PROPANOL
Refinement:The structure was refined using the NUCLSQ program. The R value is 14.2 for 1089 reflections in the resolution range 8.000 to 2.550 Ångstroms with Fobs > 2.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 117D

PubMed: 1480485




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