NDB ID: ADL047


Title:STRUCTURE OF D(CGCCCGCGGGCG)
Molecular Description:5'-D(CpGpCpCpCpGpCpGpGpGpCpG)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DC) (DC) (DG) (DC) (DG) (DG) (DG) (DC) (DG)
Primary Citation:Malinina, L., Fernandez, L.G., Huynh-Dinh, T., Subirana, J.A.
Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features.
J.Mol.Biol. , 285, pp. 1679 - 1690, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 31.290b = 42.602c = 45.995(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the X-PLOR 3.1 program. The R value is 16.5 for 3957 reflections in the resolution range 8.0 to 1.9 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 399D

PubMed: 9917405




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