NDB ID: ADLS105


Title:HIGH-RESOLUTION CRYSTAL STRUCTURE OF A FULLY MODIFIED N3'-> P5' PHOSPHORAMIDATE DNA DODECAMER DUPLEX
Molecular Description:5'-D((C42)p(G38)p(C42)p(G38)p(A43)p
(A43)p(NYM)p(NYM)p(C42)p(G38)p(C42)p
DG)-3'
Structural Features:A DOUBLE HELIX, TWINNED CRYSTAL
Nucleic Acid Sequence:
ChainsA,B,C,D,E,F:(C42) (G38) (C42) (G38) (A43) (A43) (NYM) (NYM) (C42) (G38) (C42) (DG)
Primary Citation:Tereshko, V., Gryaznov, S., Egli, M.
Consequences of Replacing the DNA 3'-Oxygen by an Amino Group: High-Resolution Crystal Structure of a Fully Modified N3'--> P5' Phosphoramidate DNA Dodecamer Duplex
J.Am.Chem.Soc. , 120, pp. 269 - 283, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 40.150b = 40.150c = 304.210(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the X-PLOR program. The R value is 19.2 for 5854 reflections in the resolution range 8.000 to 2.000 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)123

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 363D




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