NDB ID: AH0001
Title:
CRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)
Molecular Description:
5'-R(GpApApGpApGpApApGpC)-3' 5'-D(GpCpTp
TpCpTpCpTpTpC)-3'
Structural Features:
A DOUBLE HELIX
Nucleic Acid Sequence:
Chain
A:
G A A G A G A A G C
Chain
B:
(DG) (DC) (DT) (DT) (DC) (DT) (DC) (DT) (DT) (DC)
Primary Citation:
Conn, G.L., Brown, T., Leonard, G.A.
The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC). d(GCTTCTCTTC) shows significant differences to that found in solution.
Nucleic Acids Res.
,
27
, pp. 555 - 561, 1999.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
2
1
2
1
2
1
Cell Constants:
a = 25.720
b = 45.550
c = 47.810
(Ångstroms)
= 90.00
= 90.00
= 90.00
(degrees)
Refinement:
The structure was refined using the REFMAC program. The R value is 18.4 for 1867 reflections in the resolution range 20.000 to 2.500 Ångstroms with I > 0.000 sigma(I).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
404D
PubMed:
9862980
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