<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
         
         </numbering-table>
         <seq-data>
            GCGTAtACGC 
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> +T</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>19.006 -9.904 -6.251</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="20">
                  <atom-type> P  </atom-type>
                     <coordinates>17.860 -9.834 -5.124</coordinates>
               </atom>
               <atom serial="28">
                  <atom-type> O3'</atom-type>
                     <coordinates>19.652 -8.526 -0.442</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="39">
                  <atom-type> P  </atom-type>
                     <coordinates>18.575 -8.217 0.678</coordinates>
               </atom>
               <atom serial="47">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.983 -3.679 4.059</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>T</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>16.731 -3.334 4.967</coordinates>
               </atom>
               <atom serial="69">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.533 0.753 7.243</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="81">
                  <atom-type> P  </atom-type>
                     <coordinates>14.243 0.233 8.052</coordinates>
               </atom>
               <atom serial="89">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.848 1.851 7.342</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>t</base-type>
               <atom serial="102">
                  <atom-type> P  </atom-type>
                     <coordinates>7.509 1.034 7.640</coordinates>
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               <atom serial="110">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.924 2.505 5.550</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="122">
                  <atom-type> P  </atom-type>
                     <coordinates>1.924 1.278 5.847</coordinates>
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               <atom serial="130">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.046 0.061 2.823</coordinates>
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            <base>
               <position>8</position>
               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-2.716 -1.330 3.296</coordinates>
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               <atom serial="151">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>9</position>
               <base-type>G</base-type>
               <atom serial="162">
                  <atom-type> P  </atom-type>
                     <coordinates>-5.336 -5.992 0.542</coordinates>
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               <atom serial="170">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.473 -10.523 -2.027</coordinates>
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            </base>
            <base>
               <position>10</position>
               <base-type>C</base-type>
               <atom serial="184">
                  <atom-type> P  </atom-type>
                     <coordinates>-5.888 -11.734 -1.049</coordinates>
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               <atom serial="192">
                  <atom-type> O3'</atom-type>
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            <str-annotation>
            </str-annotation>
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                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
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                  <base-id><position>2</position></base-id>
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                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 122.222</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 183.333</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 244.444</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 305.556</coordinates>
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                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 427.778</coordinates>
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                  <base-id><position>9</position></base-id>
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                  <base-id><position>10</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>10</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="10" comment="sequence number in pdb file">
           11   12   13   14   15   16   17   18   19   20 
         
         </numbering-table>
         <seq-data>
            GCGTAtACGC 
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> +T</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="208">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.898 -15.153 2.540</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="222">
                  <atom-type> P  </atom-type>
                     <coordinates>11.070 -14.049 1.376</coordinates>
               </atom>
               <atom serial="230">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.173 -14.648 -3.372</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="241">
                  <atom-type> P  </atom-type>
                     <coordinates>9.747 -13.360 -4.137</coordinates>
               </atom>
               <atom serial="249">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.844 -10.816 -7.590</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>T</base-type>
               <atom serial="263">
                  <atom-type> P  </atom-type>
                     <coordinates>7.444 -9.434 -8.129</coordinates>
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               <atom serial="271">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.881 -5.429 -9.847</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>A</base-type>
               <atom serial="283">
                  <atom-type> P  </atom-type>
                     <coordinates>5.958 -4.262 -10.074</coordinates>
               </atom>
               <atom serial="291">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.677 0.717 -9.516</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>t</base-type>
               <atom serial="304">
                  <atom-type> P  </atom-type>
                     <coordinates>5.901 1.720 -9.722</coordinates>
               </atom>
               <atom serial="312">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.708 6.209 -7.609</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
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                     <coordinates>8.206 6.485 -8.119</coordinates>
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                  <atom-type> O3'</atom-type>
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               <position>8</position>
               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>12.797 9.411 -6.132</coordinates>
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                  <atom-type> O3'</atom-type>
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               <position>9</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>18.771 8.840 -4.256</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>22.854 6.303 -1.695</coordinates>
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               <position>10</position>
               <base-type>C</base-type>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
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                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
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                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
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                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <length>10</length>
               </helix>
            </str-annotation>
   </interactions>
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