NDB ID: AH0010


Title:CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)
Molecular Description:5'-D(CpTpCpCpTpCpTpTpC)-3'
5'-R(GpApApGpApGpApGpApG)-3'
Structural Features:A DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainA:(DC) (DT) (DC) (DC) (DT) (DC) (DT) (DT) (DC)
ChainB:G A A G A G A G A G
Primary Citation:Sudarsanakumar, C., Xiong, Y., Sundaralingam, M.
Crystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, d(CTCCTCTTC).r(gaagagagag).
J.Mol.Biol. , 299, pp. 103 - 112, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 46.66b = 47.61c = 54.04(Ångstroms)
= 90.0 = 90.0 = 90.0(degrees)
Refinement:The structure was refined using the CNS program. The R value is 19.9 for 2486 reflections in the resolution range 10.0 to 2.30 Ångstroms with I > 1.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1EFO

PubMed: 10860725




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey