<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
           11 
         </numbering-table>
         <seq-data>
            GCGauauACG U
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
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                  <atom-type> O3'</atom-type>
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            <base>
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               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>14.446 -16.043 16.414</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>14.519 -16.674 11.219</coordinates>
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            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>13.850 -15.325 10.730</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-5.375 0.303 7.414</coordinates>
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                  <atom-type> O3'</atom-type>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>7</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>7</position></base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id><position>8</position></base-id>
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                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
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                  <segment>
                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
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               <ss-base-coord>
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                  <coordinates>120.000 50.000</coordinates>
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                  <coordinates>120.000 450.000</coordinates>
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                  <coordinates>120.000 500.000</coordinates>
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                  <base-id><position>11</position></base-id>
                  <coordinates>120.000 550.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
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   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
           21   22   23   24   25   26   27   28   29 
           30   31 
         </numbering-table>
         <seq-data>
            GCGauauAC GU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
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            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="236">
                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
               <atom serial="251">
                  <atom-type> P  </atom-type>
                     <coordinates>14.503 -2.707 6.838</coordinates>
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               <atom serial="259">
                  <atom-type> O3'</atom-type>
                     <coordinates>14.503 -1.289 11.869</coordinates>
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               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>5.269 -5.231 20.046</coordinates>
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                  <atom-type> O3'</atom-type>
                     <coordinates>-0.310 -6.124 19.669</coordinates>
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                  <atom-type> O3'</atom-type>
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            <base>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-5.434 -11.044 16.338</coordinates>
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                     <coordinates>-5.514 -14.117 12.066</coordinates>
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            <base>
               <position>8</position>
               <base-type>A</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-7.031 -13.661 11.710</coordinates>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <base-id><position>8</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>7</position></base-id>
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                  <base-id-3p>
                     <base-id><position>8</position></base-id>
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                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>8</position></base-id>
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                  <base-id-3p>
                     <base-id><position>9</position></base-id>
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                  <edge-5p>!</edge-5p>
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                  <bond-orientation>!</bond-orientation>
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                  <base-id><position>2</position></base-id>
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                  <coordinates>0.000 250.000</coordinates>
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               <ss-base-coord>
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                  <coordinates>0.000 200.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 150.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 100.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>10</position></base-id>
                  <coordinates>0.000 50.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>11</position></base-id>
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         </model>
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   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
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                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
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                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
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                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
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                  </base-id-3p>
                  <length>3</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
               <helix id="H3">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <length>3</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
