NDB ID: AH0013


Title:2.4 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMIDINE FORM
Molecular Description:5'-R(GpCpG)-D(pApTpApT)-R(pApCpGpU)-3'
Structural Features:A DOUBLE HELIX, BULGES, FLIPPED-OUT BASES
Nucleic Acid Sequence:
Primary Citation:Tereshko, V., Wallace, S.T., Usman, N., Wincott, F.E., Egli, M.
X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid.
RNA , 7, pp. 405 - 420, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 27.69b = 47.71c = 113.62(Ångstroms)
= 90. = 90. = 90.(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 25.0 for 6220 reflections in the resolution range 10. to 2.4 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1I2X

PubMed: 11333021




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