<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
           11 
         </numbering-table>
         <seq-data>
            GCGauauACG U
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
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            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>18.802 -21.980 24.891</coordinates>
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               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>18.156 -22.932 19.797</coordinates>
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            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>17.477 -21.604 19.226</coordinates>
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               <atom serial="49">
                  <atom-type> O3'</atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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               <base-type>C</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
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               <position>11</position>
               <base-type>U</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <segment>
                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
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            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>120.000 0.000</coordinates>
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                  <base-id><position>2</position></base-id>
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                  <base-id><position>3</position></base-id>
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                  <base-id><position>4</position></base-id>
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                  <coordinates>120.000 250.000</coordinates>
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                  <coordinates>120.000 300.000</coordinates>
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                  <coordinates>120.000 450.000</coordinates>
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                  <base-id><position>10</position></base-id>
                  <coordinates>120.000 500.000</coordinates>
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                  <base-id><position>11</position></base-id>
                  <coordinates>120.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>11</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="11" comment="sequence number in pdb file">
           21   22   23   24   25   26   27   28   29 
           30   31 
         </numbering-table>
         <seq-data>
            GCGauauAC GU
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> DA</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type> DT</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="236">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.506 -9.443 13.944</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="251">
                  <atom-type> P  </atom-type>
                     <coordinates>15.180 -10.177 15.325</coordinates>
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               <atom serial="259">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.979 -8.087 19.922</coordinates>
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            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="271">
                  <atom-type> P  </atom-type>
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               <atom serial="279">
                  <atom-type> O3'</atom-type>
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               <position>4</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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               <position>5</position>
               <base-type>u</base-type>
               <atom serial="315">
                  <atom-type> P  </atom-type>
                     <coordinates>6.406 -11.542 28.316</coordinates>
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               <atom serial="323">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.789 -12.574 27.744</coordinates>
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            <base>
               <position>6</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>0.059 -13.901 28.270</coordinates>
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               <atom serial="343">
                  <atom-type> O3'</atom-type>
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               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-3.658 -18.313 24.818</coordinates>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-4.557 -22.205 20.340</coordinates>
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               <atom serial="384">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.776 -25.578 24.141</coordinates>
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               <position>9</position>
               <base-type>C</base-type>
               <atom serial="398">
                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
                     <coordinates>1.348 -27.487 21.550</coordinates>
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                     <coordinates>2.096 -28.819 22.003</coordinates>
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            <base>
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                  <atom-type> P  </atom-type>
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               <atom serial="449">
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                     <coordinates>10.803 -34.213 20.094</coordinates>
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            <str-annotation>
               <base-conformation>
                  <base-id><position>8</position></base-id>
                  <glycosyl>syn</glycosyl>
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               <base-pair comment="?">
                  <base-id-5p>
                     <base-id><position>8</position></base-id>
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                  <base-id-3p>
                     <base-id><position>9</position></base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
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                     <seg-name>SG1</seg-name>
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                     <base-id-3p><base-id><position>8</position></base-id></base-id-3p>
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                  <base-id><position>2</position></base-id>
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                  <coordinates>0.000 250.000</coordinates>
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               <ss-base-coord>
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                  <coordinates>0.000 200.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 150.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 100.000</coordinates>
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               <ss-base-coord>
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         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>10</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>9</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
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                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
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                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
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                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>10</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>11</position>
                     </base-id>
                  </base-id-3p>
                  <length>3</length>
               </helix>
               <helix id="H2">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>4</length>
               </helix>
               <helix id="H3">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>9</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <length>3</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
