<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            GCUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>UFP</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.110 -16.464 4.680</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>27.933 -14.991 4.011</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>25.479 -14.771 -0.556</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>25.512 -13.182 -0.836</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>21.310 -10.864 -2.993</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>21.041 -9.266 -2.955</coordinates>
               </atom>
               <atom serial="69">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.132 -7.137 -5.339</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="81">
                  <atom-type> P  </atom-type>
                     <coordinates>17.581 -5.609 -5.233</coordinates>
               </atom>
               <atom serial="89">
                  <atom-type> O3'</atom-type>
                     <coordinates>14.641 -1.729 -4.238</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="101">
                  <atom-type> P  </atom-type>
                     <coordinates>15.765 -0.587 -4.090</coordinates>
               </atom>
               <atom serial="109">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.453 3.226 -0.655</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="124">
                  <atom-type> P  </atom-type>
                     <coordinates>16.786 4.036 -1.007</coordinates>
               </atom>
               <atom serial="132">
                  <atom-type> O3'</atom-type>
                     <coordinates>18.955 6.452 3.198</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="147">
                  <atom-type> P  </atom-type>
                     <coordinates>20.109 7.436 2.626</coordinates>
               </atom>
               <atom serial="155">
                  <atom-type> O3'</atom-type>
                     <coordinates>24.646 8.065 5.114</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
               <atom serial="180">
                  <atom-type> O3'</atom-type>
                     <coordinates>30.341 9.695 2.686</coordinates>
               </atom>
               <atom serial="184">
                  <atom-type> P  </atom-type>
                     <coordinates>24.878 9.540 4.568</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>160.976 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>160.976 107.317</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>160.976 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>160.976 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>160.976 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>160.976 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>160.976 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>160.976 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>160.976 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1 
            2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            G CUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>UFP</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="192">
                  <atom-type> O3'</atom-type>
                     <coordinates>31.743 -5.369 3.657</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="207">
                  <atom-type> P  </atom-type>
                     <coordinates>30.513 -6.092 4.363</coordinates>
               </atom>
               <atom serial="215">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.102 -3.976 8.472</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="227">
                  <atom-type> P  </atom-type>
                     <coordinates>26.990 -5.086 8.836</coordinates>
               </atom>
               <atom serial="235">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.399 -3.654 10.534</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="247">
                  <atom-type> P  </atom-type>
                     <coordinates>21.281 -4.787 10.729</coordinates>
               </atom>
               <atom serial="255">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.524 -4.156 12.228</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="267">
                  <atom-type> P  </atom-type>
                     <coordinates>16.076 -5.710 12.214</coordinates>
               </atom>
               <atom serial="275">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.412 -7.010 11.019</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="287">
                  <atom-type> P  </atom-type>
                     <coordinates>11.356 -8.617 11.104</coordinates>
               </atom>
               <atom serial="295">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.149 -12.343 6.999</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="310">
                  <atom-type> P  </atom-type>
                     <coordinates>10.457 -13.882 7.391</coordinates>
               </atom>
               <atom serial="318">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.044 -17.352 3.459</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="333">
                  <atom-type> P  </atom-type>
                     <coordinates>10.952 -18.628 4.434</coordinates>
               </atom>
               <atom serial="341">
                  <atom-type> O3'</atom-type>
                     <coordinates>14.034 -22.343 3.191</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
               <atom serial="366">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.038 -27.883 2.373</coordinates>
               </atom>
               <atom serial="370">
                  <atom-type> P  </atom-type>
                     <coordinates>12.908 -23.080 4.076</coordinates>
               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>9</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 107.317</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
