<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            GCUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>UFP</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.116 -16.447 4.542</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>27.960 -15.059 3.715</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>25.437 -14.728 -0.828</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>25.559 -13.140 -1.065</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>21.319 -10.807 -3.144</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>21.012 -9.233 -3.083</coordinates>
               </atom>
               <atom serial="69">
                  <atom-type> O3'</atom-type>
                     <coordinates>17.166 -7.077 -5.441</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="81">
                  <atom-type> P  </atom-type>
                     <coordinates>17.627 -5.540 -5.309</coordinates>
               </atom>
               <atom serial="89">
                  <atom-type> O3'</atom-type>
                     <coordinates>14.642 -1.607 -4.237</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="101">
                  <atom-type> P  </atom-type>
                     <coordinates>15.824 -0.518 -4.158</coordinates>
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               <atom serial="109">
                  <atom-type> O3'</atom-type>
                     <coordinates>15.423 3.229 -0.666</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>16.772 4.071 -0.923</coordinates>
               </atom>
               <atom serial="132">
                  <atom-type> O3'</atom-type>
                     <coordinates>18.919 6.397 3.148</coordinates>
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            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="147">
                  <atom-type> P  </atom-type>
                     <coordinates>20.112 7.402 2.701</coordinates>
               </atom>
               <atom serial="155">
                  <atom-type> O3'</atom-type>
                     <coordinates>24.642 7.928 5.163</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
               <atom serial="180">
                  <atom-type> O3'</atom-type>
                     <coordinates>30.437 9.649 2.833</coordinates>
               </atom>
               <atom serial="184">
                  <atom-type> P  </atom-type>
                     <coordinates>25.009 9.382 4.623</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>160.976 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>160.976 107.317</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>160.976 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>160.976 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>160.976 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>160.976 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>160.976 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>160.976 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>160.976 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1 
            2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            G CUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>UFP</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="192">
                  <atom-type> O3'</atom-type>
                     <coordinates>31.730 -5.455 3.450</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="207">
                  <atom-type> P  </atom-type>
                     <coordinates>30.494 -6.148 4.203</coordinates>
               </atom>
               <atom serial="215">
                  <atom-type> O3'</atom-type>
                     <coordinates>28.140 -4.121 8.329</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="227">
                  <atom-type> P  </atom-type>
                     <coordinates>27.009 -5.221 8.668</coordinates>
               </atom>
               <atom serial="235">
                  <atom-type> O3'</atom-type>
                     <coordinates>22.376 -3.807 10.446</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="247">
                  <atom-type> P  </atom-type>
                     <coordinates>21.254 -4.943 10.652</coordinates>
               </atom>
               <atom serial="255">
                  <atom-type> O3'</atom-type>
                     <coordinates>16.519 -4.376 12.108</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="267">
                  <atom-type> P  </atom-type>
                     <coordinates>16.125 -5.940 12.042</coordinates>
               </atom>
               <atom serial="275">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.378 -7.272 10.818</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="287">
                  <atom-type> P  </atom-type>
                     <coordinates>11.496 -8.878 10.871</coordinates>
               </atom>
               <atom serial="295">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.029 -12.407 6.806</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="310">
                  <atom-type> P  </atom-type>
                     <coordinates>10.226 -13.985 7.089</coordinates>
               </atom>
               <atom serial="318">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.864 -17.383 3.192</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="333">
                  <atom-type> P  </atom-type>
                     <coordinates>10.844 -18.680 4.151</coordinates>
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               <atom serial="341">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.967 -22.337 2.709</coordinates>
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            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
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                  <atom-type> O3'</atom-type>
                     <coordinates>10.791 -28.456 2.920</coordinates>
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               <atom serial="370">
                  <atom-type> P  </atom-type>
                     <coordinates>13.082 -23.185 3.763</coordinates>
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            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 442.683</coordinates>
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               <ss-base-coord>
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                  <coordinates>0.000 375.610</coordinates>
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               <ss-base-coord>
                  <base-id><position>4</position></base-id>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
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               <ss-base-coord>
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               <ss-base-coord>
                  <base-id><position>7</position></base-id>
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               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 40.244</coordinates>
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               <ss-base-coord>
                  <base-id><position>9</position></base-id>
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               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
