NDB ID: AH0017


Title:STRUCTURE OF THE HYBRID RNA/DNA R-GCUUCGGC-D[CL]U IN PRESENCE OF RH(NH3)6+++
Molecular Description:5'-R(GpCpUpUpCpGpGpC)-D(p(UCL))-3'
Structural Features:A DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
Primary Citation:Cruse, W., Saludjian, P., Neuman, A., Prange, T.
Destabilizing effect of a fluorouracil extra base in a hybrid RNA duplex compared with bromo and chloro analogues
Acta Crystallogr., Sect.D , 57, pp. 1609 - 1613, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 53.820b = 19.380c = 50.300(Ångstroms)
= 90.00 = 109.90 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:cacodylate buffer, MPD, rhodium-hexammine
Reservoir:MPD
Refinement:The structure was refined using the SHELXL-97 program. The R value is 17.2 for 3641 reflections in the resolution range 6.0 to 1.8 Ångstroms with I > 4 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1IDW

PubMed: 11679725




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