<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            GCUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>BRU</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.222 3.566 4.752</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="21">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.767 4.920 5.545</coordinates>
               </atom>
               <atom serial="29">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.230 4.911 10.123</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="41">
                  <atom-type> P  </atom-type>
                     <coordinates>-5.253 6.462 10.460</coordinates>
               </atom>
               <atom serial="49">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.127 8.706 12.666</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="61">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.821 10.261 12.791</coordinates>
               </atom>
               <atom serial="69">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.200 12.205 15.314</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="81">
                  <atom-type> P  </atom-type>
                     <coordinates>2.727 13.715 15.312</coordinates>
               </atom>
               <atom serial="89">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.687 17.697 14.523</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="101">
                  <atom-type> P  </atom-type>
                     <coordinates>4.535 18.817 14.498</coordinates>
               </atom>
               <atom serial="109">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.012 22.867 11.354</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="124">
                  <atom-type> P  </atom-type>
                     <coordinates>3.668 23.714 11.667</coordinates>
               </atom>
               <atom serial="132">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.422 26.365 7.728</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="147">
                  <atom-type> P  </atom-type>
                     <coordinates>0.313 27.355 8.309</coordinates>
               </atom>
               <atom serial="155">
                  <atom-type> O3'</atom-type>
                     <coordinates>-4.233 28.139 5.888</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
               <atom serial="180">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.950 29.764 8.538</coordinates>
               </atom>
               <atom serial="184">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.465 29.583 6.528</coordinates>
               </atom>
            </base>
            <str-annotation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>160.976 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>160.976 107.317</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>160.976 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>160.976 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>160.976 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>160.976 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>160.976 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>160.976 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>160.976 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>9</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="9" comment="sequence number in pdb file">
            1 
            2    3    4    5    6    7    8    9 
         </numbering-table>
         <seq-data>
            G CUUCGGCu
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>BRU</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="192">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.396 14.588 6.692</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="207">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.215 13.913 5.855</coordinates>
               </atom>
               <atom serial="215">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.915 16.187 1.823</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>U</base-type>
               <atom serial="227">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.759 15.166 1.409</coordinates>
               </atom>
               <atom serial="235">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.160 16.653 -0.333</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>U</base-type>
               <atom serial="247">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.999 15.578 -0.598</coordinates>
               </atom>
               <atom serial="255">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.712 16.170 -2.092</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="267">
                  <atom-type> P  </atom-type>
                     <coordinates>4.190 14.649 -2.141</coordinates>
               </atom>
               <atom serial="275">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.791 13.141 -1.021</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="287">
                  <atom-type> P  </atom-type>
                     <coordinates>8.668 11.532 -1.095</coordinates>
               </atom>
               <atom serial="295">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.168 7.694 2.782</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="310">
                  <atom-type> P  </atom-type>
                     <coordinates>9.946 6.168 2.274</coordinates>
               </atom>
               <atom serial="318">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.272 2.636 6.038</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>C</base-type>
               <atom serial="333">
                  <atom-type> P  </atom-type>
                     <coordinates>9.072 1.302 5.287</coordinates>
               </atom>
               <atom serial="341">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.992 -2.400 7.347</coordinates>
               </atom>
            </base>
            <base>
               <position>9</position>
               <base-type>u</base-type>
               <atom serial="366">
                  <atom-type> O3'</atom-type>
                     <coordinates>6.672 -5.111 10.778</coordinates>
               </atom>
               <atom serial="370">
                  <atom-type> P  </atom-type>
                     <coordinates>5.055 -1.646 8.746</coordinates>
               </atom>
            </base>
            <str-annotation>
               <base-conformation>
                  <base-id><position>9</position></base-id>
                  <glycosyl>syn</glycosyl>
               </base-conformation>
               <single-strand>
                  <segment>
                     <seg-name>SG1</seg-name>
                     <base-id-5p><base-id><position>9</position></base-id></base-id-5p>
                     <base-id-3p><base-id><position>9</position></base-id></base-id-3p>
                  </segment>
               </single-strand>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 509.756</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 442.683</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 375.610</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 308.537</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 241.463</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 174.390</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 107.317</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 40.244</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>9</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>!</edge-5p>
                  <edge-3p>!</edge-3p>
                  <bond-orientation>!</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
