NDB ID: AH0019


Title:THE CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID REVEALS NOVEL INTERMOLECULAR INTERCALATION
Molecular Description:5'-R(CpApApApGpApApApApG)-3'
5'-D(CpTpTpTpTpCpTpTpTpG)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: C A A A G A A A A G
ChainB: (DC) (DT) (DT) (DT) (DT) (DC) (DT) (DT) (DT) (DG)
Primary Citation:Han, G.W., Kopka, M.L., Langs, D., Sawaya, M.R., Dickerson, R.E.
Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping
Proc.Natl.Acad.Sci.USA , 100, pp. 9214 - 9219, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 45.234b = 46.780c = 56.560(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:MPD, magnesium acetate, spermidine, sodium cacodylate
Refinement:The structure was refined using the CNS program. The R value is 22.3 for 2171 reflections in the resolution range 10 to 2.38 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1JB8

PubMed: 12872000




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