<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8 
         </numbering-table>
         <seq-data>
            CCCIUGGG
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>  I</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.419 19.223 1.321</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.178 20.247 2.403</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.263 22.591 6.337</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="38">
                  <atom-type> P  </atom-type>
                     <coordinates>1.084 23.635 6.712</coordinates>
               </atom>
               <atom serial="46">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.517 28.125 8.907</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>I</base-type>
               <atom serial="58">
                  <atom-type> P  </atom-type>
                     <coordinates>1.108 28.851 9.131</coordinates>
               </atom>
               <atom serial="66">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.501 33.986 9.304</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="80">
                  <atom-type> P  </atom-type>
                     <coordinates>-0.000 34.251 9.754</coordinates>
               </atom>
               <atom serial="88">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.561 38.525 8.305</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="100">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.100 38.516 8.778</coordinates>
               </atom>
               <atom serial="108">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.841 40.344 5.979</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="123">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.261 39.850 6.488</coordinates>
               </atom>
               <atom serial="131">
                  <atom-type> O3'</atom-type>
                     <coordinates>-13.479 38.926 3.657</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>G</base-type>
               <atom serial="146">
                  <atom-type> P  </atom-type>
                     <coordinates>-14.683 38.173 4.367</coordinates>
               </atom>
               <atom serial="154">
                  <atom-type> O3'</atom-type>
                     <coordinates>-18.381 35.506 2.833</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>188.571 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>188.571 78.571</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>188.571 157.143</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>188.571 235.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>188.571 314.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>188.571 392.857</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>188.571 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>188.571 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>8</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="8" comment="sequence number in pdb file">
            9   10 
           11   12   13   14   15   16 
         </numbering-table>
         <seq-data>
            CC CIUGGG
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>  I</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>C</base-type>
               <atom serial="174">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.343 22.335 0.448</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>C</base-type>
               <atom serial="186">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.190 23.051 -0.449</coordinates>
               </atom>
               <atom serial="194">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.312 26.412 -4.131</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>C</base-type>
               <atom serial="206">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.790 26.683 -4.593</coordinates>
               </atom>
               <atom serial="214">
                  <atom-type> O3'</atom-type>
                     <coordinates>-7.801 31.520 -6.333</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>I</base-type>
               <atom serial="226">
                  <atom-type> P  </atom-type>
                     <coordinates>-6.222 31.362 -6.630</coordinates>
               </atom>
               <atom serial="234">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.512 35.651 -7.207</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="248">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.022 35.052 -7.377</coordinates>
               </atom>
               <atom serial="256">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.770 37.525 -5.779</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>G</base-type>
               <atom serial="268">
                  <atom-type> P  </atom-type>
                     <coordinates>3.066 36.608 -5.899</coordinates>
               </atom>
               <atom serial="276">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.352 36.407 -3.262</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>G</base-type>
               <atom serial="291">
                  <atom-type> P  </atom-type>
                     <coordinates>8.243 35.122 -3.628</coordinates>
               </atom>
               <atom serial="299">
                  <atom-type> O3'</atom-type>
                     <coordinates>11.356 32.448 -0.516</coordinates>
               </atom>
            </base>
            <base>
               <position>8</position>
               <base-type>G</base-type>
               <atom serial="314">
                  <atom-type> P  </atom-type>
                     <coordinates>12.148 31.516 -1.557</coordinates>
               </atom>
               <atom serial="322">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.732 26.690 -0.121</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 471.429</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 392.857</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 314.286</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 235.714</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 157.143</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 78.571</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>8</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>8</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>8</position>
                     </base-id>
                  </base-id-3p>
                  <length>8</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
