<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            1    2    3    4    5    6    7 
         </numbering-table>
         <seq-data>
            UAGCUCC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.332 -5.955 -1.818</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.097 -5.518 -2.711</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.045 -1.326 -5.731</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="40">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.622 -1.089 -6.385</coordinates>
               </atom>
               <atom serial="48">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.680 3.168 -8.017</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>C</base-type>
               <atom serial="63">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.241 2.784 -8.582</coordinates>
               </atom>
               <atom serial="71">
                  <atom-type> O3'</atom-type>
                     <coordinates>0.064 5.428 -7.926</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>1.079 4.471 -8.653</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.993 4.760 -6.523</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="103">
                  <atom-type> P  </atom-type>
                     <coordinates>7.007 3.746 -7.179</coordinates>
               </atom>
               <atom serial="111">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.933 1.559 -4.617</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="123">
                  <atom-type> P  </atom-type>
                     <coordinates>11.574 0.370 -5.451</coordinates>
               </atom>
               <atom serial="131">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.685 -3.842 -3.499</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 183.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            8    9   10 
           11   12   13   14 
         </numbering-table>
         <seq-data>
            GGG GCUA
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="148">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.237 -11.439 1.485</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="163">
                  <atom-type> P  </atom-type>
                     <coordinates>0.719 -10.176 2.268</coordinates>
               </atom>
               <atom serial="171">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.570 -7.343 5.302</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="186">
                  <atom-type> P  </atom-type>
                     <coordinates>2.741 -6.099 5.827</coordinates>
               </atom>
               <atom serial="194">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.789 -1.691 7.282</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="209">
                  <atom-type> P  </atom-type>
                     <coordinates>3.476 -0.886 7.699</coordinates>
               </atom>
               <atom serial="217">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.115 4.034 7.240</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="232">
                  <atom-type> P  </atom-type>
                     <coordinates>1.646 4.362 7.800</coordinates>
               </atom>
               <atom serial="240">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.187 8.472 6.120</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>U</base-type>
               <atom serial="252">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.578 8.276 6.877</coordinates>
               </atom>
               <atom serial="260">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.921 9.846 4.306</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="272">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.254 9.535 5.149</coordinates>
               </atom>
               <atom serial="280">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.861 8.668 3.057</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>220.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>220.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>220.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>220.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>220.000 183.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>220.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>220.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>7</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
