<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

   <molecule id="1">
      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            1    2    3    4    5    6    7 
         </numbering-table>
         <seq-data>
            UAGCCCC
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.818 -10.573 1.486</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>-5.632 -9.212 2.283</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.538 -8.717 5.363</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="40">
                  <atom-type> P  </atom-type>
                     <coordinates>-1.457 -7.320 6.115</coordinates>
               </atom>
               <atom serial="48">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.770 -4.871 7.530</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>C</base-type>
               <atom serial="63">
                  <atom-type> P  </atom-type>
                     <coordinates>2.460 -3.374 7.936</coordinates>
               </atom>
               <atom serial="71">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.556 0.580 6.935</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>4.823 1.903 7.455</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.214 6.515 5.305</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="103">
                  <atom-type> P  </atom-type>
                     <coordinates>4.260 7.369 6.244</coordinates>
               </atom>
               <atom serial="111">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.783 11.259 3.984</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="123">
                  <atom-type> P  </atom-type>
                     <coordinates>0.720 12.100 4.848</coordinates>
               </atom>
               <atom serial="131">
                  <atom-type> O3'</atom-type>
                     <coordinates>-3.686 13.930 3.427</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>220.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>220.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>220.000 183.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>220.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>220.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>220.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>220.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            8    9   10 
           11   12   13   14 
         </numbering-table>
         <seq-data>
            GGG GCUA
         </seq-data>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="148">
                  <atom-type> O3'</atom-type>
                     <coordinates>-11.882 1.671 -0.826</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="163">
                  <atom-type> P  </atom-type>
                     <coordinates>-10.746 1.145 -1.794</coordinates>
               </atom>
               <atom serial="171">
                  <atom-type> O3'</atom-type>
                     <coordinates>-8.466 4.116 -5.078</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="186">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.399 3.300 -5.887</coordinates>
               </atom>
               <atom serial="194">
                  <atom-type> O3'</atom-type>
                     <coordinates>-2.990 4.815 -7.767</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="209">
                  <atom-type> P  </atom-type>
                     <coordinates>-2.350 3.433 -8.203</coordinates>
               </atom>
               <atom serial="217">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.158 2.802 -7.784</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="232">
                  <atom-type> P  </atom-type>
                     <coordinates>3.666 1.392 -8.304</coordinates>
               </atom>
               <atom serial="240">
                  <atom-type> O3'</atom-type>
                     <coordinates>7.779 -0.726 -6.533</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>U</base-type>
               <atom serial="252">
                  <atom-type> P  </atom-type>
                     <coordinates>7.931 -2.230 -7.002</coordinates>
               </atom>
               <atom serial="260">
                  <atom-type> O3'</atom-type>
                     <coordinates>9.997 -6.020 -4.269</coordinates>
               </atom>
            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="272">
                  <atom-type> P  </atom-type>
                     <coordinates>9.900 -7.292 -5.208</coordinates>
               </atom>
               <atom serial="280">
                  <atom-type> O3'</atom-type>
                     <coordinates>8.960 -11.983 -3.738</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 275.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 183.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>7</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
