<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

<rnaml version="1.0">

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      <sequence>
         <numbering-system id="1" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            1    2    3    4    5    6    7 
         </numbering-table>
         <seq-data>
            UAGCUCC
         </seq-data>
         <seq-annotation comment="?">
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>U</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
                     <coordinates>-10.531 -5.846 -1.794</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>A</base-type>
               <atom serial="18">
                  <atom-type> P  </atom-type>
                     <coordinates>-9.239 -5.496 -2.666</coordinates>
               </atom>
               <atom serial="26">
                  <atom-type> O3'</atom-type>
                     <coordinates>-9.152 -1.263 -5.727</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="40">
                  <atom-type> P  </atom-type>
                     <coordinates>-7.737 -1.079 -6.412</coordinates>
               </atom>
               <atom serial="48">
                  <atom-type> O3'</atom-type>
                     <coordinates>-5.761 3.233 -8.015</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>C</base-type>
               <atom serial="63">
                  <atom-type> P  </atom-type>
                     <coordinates>-4.332 2.765 -8.546</coordinates>
               </atom>
               <atom serial="71">
                  <atom-type> O3'</atom-type>
                     <coordinates>-0.046 5.314 -7.954</coordinates>
               </atom>
            </base>
            <base>
               <position>5</position>
               <base-type>U</base-type>
               <atom serial="83">
                  <atom-type> P  </atom-type>
                     <coordinates>1.031 4.331 -8.594</coordinates>
               </atom>
               <atom serial="91">
                  <atom-type> O3'</atom-type>
                     <coordinates>5.973 4.660 -6.441</coordinates>
               </atom>
            </base>
            <base>
               <position>6</position>
               <base-type>C</base-type>
               <atom serial="103">
                  <atom-type> P  </atom-type>
                     <coordinates>7.040 3.678 -7.096</coordinates>
               </atom>
               <atom serial="111">
                  <atom-type> O3'</atom-type>
                     <coordinates>10.969 1.592 -4.559</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>C</base-type>
               <atom serial="123">
                  <atom-type> P  </atom-type>
                     <coordinates>11.633 0.476 -5.464</coordinates>
               </atom>
               <atom serial="131">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.682 -3.868 -3.651</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>0.000 0.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>0.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 183.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 275.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 366.667</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>0.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
               </ss-base-coord>
            </secondary-structure-display>
         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>7</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="7" comment="sequence number in pdb file">
            8    9   10 
           11   12   13   14 
         </numbering-table>
         <seq-data>
            GGG GCuA
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type> IU</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>G</base-type>
               <atom serial="148">
                  <atom-type> O3'</atom-type>
                     <coordinates>1.271 -11.605 1.326</coordinates>
               </atom>
            </base>
            <base>
               <position>2</position>
               <base-type>G</base-type>
               <atom serial="163">
                  <atom-type> P  </atom-type>
                     <coordinates>0.857 -10.368 2.234</coordinates>
               </atom>
               <atom serial="171">
                  <atom-type> O3'</atom-type>
                     <coordinates>3.714 -7.611 5.295</coordinates>
               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>G</base-type>
               <atom serial="186">
                  <atom-type> P  </atom-type>
                     <coordinates>2.886 -6.334 5.786</coordinates>
               </atom>
               <atom serial="194">
                  <atom-type> O3'</atom-type>
                     <coordinates>4.632 -1.915 7.252</coordinates>
               </atom>
            </base>
            <base>
               <position>4</position>
               <base-type>G</base-type>
               <atom serial="209">
                  <atom-type> P  </atom-type>
                     <coordinates>3.393 -0.989 7.635</coordinates>
               </atom>
               <atom serial="217">
                  <atom-type> O3'</atom-type>
                     <coordinates>2.979 3.945 7.168</coordinates>
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            </base>
            <base>
               <position>5</position>
               <base-type>C</base-type>
               <atom serial="232">
                  <atom-type> P  </atom-type>
                     <coordinates>1.557 4.204 7.804</coordinates>
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               <atom serial="240">
                  <atom-type> O3'</atom-type>
                     <coordinates>-1.213 8.384 6.106</coordinates>
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            <base>
               <position>6</position>
               <base-type>u</base-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>-2.637 8.477 6.787</coordinates>
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               <atom serial="260">
                  <atom-type> O3'</atom-type>
                     <coordinates>-6.835 9.959 4.289</coordinates>
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            </base>
            <base>
               <position>7</position>
               <base-type>A</base-type>
               <atom serial="273">
                  <atom-type> P  </atom-type>
                     <coordinates>-8.189 9.672 5.074</coordinates>
               </atom>
               <atom serial="281">
                  <atom-type> O3'</atom-type>
                     <coordinates>-12.767 8.732 3.324</coordinates>
               </atom>
            </base>
            <str-annotation>
            </str-annotation>
            <secondary-structure-display comment="x,y coodinates">
               <ss-base-coord>
                  <base-id><position>1</position></base-id>
                  <coordinates>220.000 550.000</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>2</position></base-id>
                  <coordinates>220.000 458.333</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>3</position></base-id>
                  <coordinates>220.000 366.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>4</position></base-id>
                  <coordinates>220.000 275.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>220.000 183.333</coordinates>
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               <ss-base-coord>
                  <base-id><position>6</position></base-id>
                  <coordinates>220.000 91.667</coordinates>
               </ss-base-coord>
               <ss-base-coord>
                  <base-id><position>7</position></base-id>
                  <coordinates>220.000 0.000</coordinates>
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            </secondary-structure-display>
         </model>
      </structure>
   </molecule>


   <interactions>
            <str-annotation>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>2</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>6</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>3</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>5</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>4</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>4</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>5</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>3</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>W</edge-5p>
                  <edge-3p>W</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>6</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>7</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>7</position>
                     </base-id>
                  </base-id-3p>
                  <length>7</length>
               </helix>
            </str-annotation>
   </interactions>
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