<?xml version="1.0"?>
<!DOCTYPE rnaml SYSTEM "rnaml.dtd">

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      <sequence>
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            <numbering-range>
               <start>1</start>
               <end>12</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="12" comment="sequence number in pdb file">
            1    2    3    4    5    6    7    8    9   10 
           11   12 
         </numbering-table>
         <seq-data>
            cgcgaauucg cg
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type>A44</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type>A44</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type>U36</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type>U36</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>10</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>11</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>12</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
            <base>
               <position>1</position>
               <base-type>c</base-type>
               <atom serial="6">
                  <atom-type> O3'</atom-type>
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            </base>
            <base>
               <position>2</position>
               <base-type>g</base-type>
               <atom serial="22">
                  <atom-type> P  </atom-type>
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               </atom>
               <atom serial="30">
                  <atom-type> O3'</atom-type>
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               </atom>
            </base>
            <base>
               <position>3</position>
               <base-type>c</base-type>
               <atom serial="49">
                  <atom-type> P  </atom-type>
                     <coordinates>16.085 21.910 2.774</coordinates>
               </atom>
               <atom serial="57">
                  <atom-type> O3'</atom-type>
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               <base-type>g</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="108">
                  <atom-type> O3'</atom-type>
                     <coordinates>13.786 11.194 13.311</coordinates>
               </atom>
            </base>
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               <position>6</position>
               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> P  </atom-type>
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               <atom serial="160">
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               <base-type>u</base-type>
               <atom serial="176">
                  <atom-type> P  </atom-type>
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               <atom serial="184">
                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
                     <coordinates>25.422 0.405 6.741</coordinates>
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               <atom serial="208">
                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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                  <base-id><position>3</position></base-id>
                  <coordinates>0.000 100.000</coordinates>
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                  <base-id><position>4</position></base-id>
                  <coordinates>0.000 150.000</coordinates>
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               <ss-base-coord>
                  <base-id><position>5</position></base-id>
                  <coordinates>0.000 200.000</coordinates>
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                  <base-id><position>6</position></base-id>
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                  <coordinates>0.000 400.000</coordinates>
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                  <base-id><position>10</position></base-id>
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                  <base-id><position>12</position></base-id>
                  <coordinates>0.000 550.000</coordinates>
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         </model>
      </structure>
   </molecule>

   <molecule id="2">
      <sequence>
         <numbering-system id="2" used-in-file="false">
            <numbering-range>
               <start>1</start>
               <end>12</end>
            </numbering-range>
         </numbering-system>
         <numbering-table length="12" comment="sequence number in pdb file">
           13   14   15   16   17   18   19   20 
           21   22   23   24 
         </numbering-table>
         <seq-data>
            cgcgaauu cgcg
         </seq-data>
         <seq-annotation comment="?">
            <modification>
               <base-id><position>1</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>2</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>3</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>4</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>5</position></base-id>
               <modified-type>A44</modified-type>
            </modification>
            <modification>
               <base-id><position>6</position></base-id>
               <modified-type>A44</modified-type>
            </modification>
            <modification>
               <base-id><position>7</position></base-id>
               <modified-type>U36</modified-type>
            </modification>
            <modification>
               <base-id><position>8</position></base-id>
               <modified-type>U36</modified-type>
            </modification>
            <modification>
               <base-id><position>9</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>10</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
            <modification>
               <base-id><position>11</position></base-id>
               <modified-type>C43</modified-type>
            </modification>
            <modification>
               <base-id><position>12</position></base-id>
               <modified-type>G48</modified-type>
            </modification>
         </seq-annotation>
      </sequence>
      <structure>
         <model id="?">
            <model-info>
               <method>Crystallography ?</method>
               <resolution>? Angstroms</resolution>
            </model-info>
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               <position>1</position>
               <base-type>c</base-type>
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                  <atom-type> O3'</atom-type>
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                  <atom-type> P  </atom-type>
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               <position>3</position>
               <base-type>c</base-type>
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                  <atom-type> P  </atom-type>
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               <base-type>a</base-type>
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                  <atom-type> P  </atom-type>
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                  <atom-type> O3'</atom-type>
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   <interactions>
            <str-annotation>
               <base-pair comment="?">
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                        <molecule-id ref="1"/><position>1</position>
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                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>2</position>
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                  <base-id-3p>
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                  <edge-5p>+</edge-5p>
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                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>3</position>
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                  <edge-3p>+</edge-3p>
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               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>4</position>
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               <base-pair comment="?">
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                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
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                        <molecule-id ref="1"/><position>6</position>
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                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
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                        <molecule-id ref="1"/><position>7</position>
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                  <bond-orientation>c</bond-orientation>
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               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>8</position>
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                  <edge-5p>-</edge-5p>
                  <edge-3p>-</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
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                        <molecule-id ref="1"/><position>9</position>
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               <base-pair comment="?">
                  <base-id-5p>
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                  <edge-5p>+</edge-5p>
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                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>11</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>2</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <base-pair comment="?">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>12</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>1</position>
                     </base-id>
                  </base-id-3p>
                  <edge-5p>+</edge-5p>
                  <edge-3p>+</edge-3p>
                  <bond-orientation>c</bond-orientation>
               </base-pair>
               <helix id="H1">
                  <base-id-5p>
                     <base-id>
                        <molecule-id ref="1"/><position>1</position>
                     </base-id>
                  </base-id-5p>
                  <base-id-3p>
                     <base-id>
                        <molecule-id ref="2"/><position>12</position>
                     </base-id>
                  </base-id-3p>
                  <length>12</length>
               </helix>
            </str-annotation>
   </interactions>
</rnaml>
