NDB ID: AR0022
Title:
STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS
Molecular Description:
5'-R(GpUpGpUpUpUpApC)-3'
5'-R(GpUpApGpGpCpApC)-3'
Structural Features:
A DOUBLE HELIX
Nucleic Acid Sequence:
Chain
A:
G U G U U U A C
Chain
B:
G U A G G C A C
Primary Citation:
Deng, J., Sundaralingam, M.
Synthesis and crystal structure of an octamer RNA r(guguuuac)/r(guaggcac) with G.G/U.U tandem wobble base pairs: comparison with other tandem G.U pairs.
Nucleic Acids Res.
,
28
, pp. 4376 - 4381, 2000.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
H
3
Cell Constants:
a = 41.920
b = 41.920
c = 56.410
(Ångstroms)
= 90.00
= 90.00
= 120.00
(degrees)
Refinement:
The structure was refined using the X-PLOR 3.1 program. The R value is 19.8 for 2708 reflections in the resolution range 8.0 to 1.9 Ångstroms with Fobs > 2.0 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
472D
PubMed:
11058138
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