NDB ID: AR0026


Title:CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS
Molecular Description:5'-R(GpCpCpApCpCpCpUpG)-3'
5'-R(CpApGpGpGpUpCpGpGpC)-3'
Structural Features:A DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainA:G C C A C C C U G
ChainB:C A G G G U C G G C
Primary Citation:Xiong, Y., Sundaralingam, M.
Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.
RNA , 6, pp. 1316 - 1324, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 42   21   2
Cell Constants:
a = 57.15b = 57.15c = 43.54(Ångstroms)
= 90.0 = 90.0 = 90.0(degrees)
Refinement:The structure was refined using the CNS 0.9 program. The R value is 20.4 for 3757 reflections in the resolution range 10.0 to 2.2 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1DQF

PubMed: 10999608

FR3D annotation of basepairs, stacking, motifs, and other interactions for: 1DQF




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