NDB ID: AR0031


Title:CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING.
Molecular Description:5'-R((OMC)p(OMG)p(OMC)p(OMG)p(OMC)p
(OMG))-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(OMC) (OMG) (OMC) (OMG) (OMC) (OMG)
Primary Citation:Adamiak, D.A., Rypniewski, W.R., Milecki, J., Adamiak, R.W.
The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.
Nucleic Acids Res. , 29, pp. 4144 - 4153, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 32   2
Cell Constants:
a = 24.805b = 24.805c = 77.372(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 15.5 for 8715 reflections in the resolution range 20. to 1.19 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1I7J

PubMed: 11600703




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