NDB ID: AR0033


Title:CRYSTAL STRUCTURE OF A 14MER RNA CONTAINING DOUBLE UU BULGES IN TWO CRYSTAL FORMS: A NOVEL U*(AU) INTRAMOLECULAR BASE TRIPLE
Molecular Description:5'-R(GpGpUpApUpUpUpCpGpGpUpAp(CBR)pC)-3'
Structural Features:A DOUBLE HELIX, BULGES, FLIPPED-OUT BASES, BASE TRIPLET
Nucleic Acid Sequence:
ChainA:G G U A U U U C G G U A (CBR) C
ChainB:G G U A U U U U G G U A (CBR) C
Primary Citation:Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M.
Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA , 7, pp. 1425 - 1431, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 60.04b = 29.53c = 52.44(Ångstroms)
= 90. = 120.83 = 90.(degrees)
Refinement:The structure was refined using the CNS program. The R value is 20.9 for 6948 reflections in the resolution range 10. to 1.8 Ångstroms with Fobs > 2. sigma(Fobs).

Biological Assembly 1
Other Views
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1IK5

PubMed: 11680847




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